Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k11
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   3.7  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   3.7  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   4.9  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   6.5  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   8.6  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   8.6  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 128 RISVMYAHDKLSDMIADQCLNEMYPRSKRLEIEESDEPCIIFCV 259
           RISVMYA  ++   I +  +   Y R+ +  +     PCI+  V
Sbjct: 334 RISVMYAVTRILPAIQNNIIFLEYSRTSKQGMWSILSPCILIAV 377


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 257 VLKKFGIMSPTGVINLEAYRKRVQLPEQLAQRNSINDFGSACLESAEATQHKQD 418
           ++     M   GVI+ +   + + L + +  R  I DFGSA + ++    H++D
Sbjct: 207 IVDSIDYMHGRGVIHRDLKPENILLDDNM--RTKITDFGSAKILNSSHGSHEED 258


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 395 EATQHKQDVCKKAKVFNECT 454
           E ++++Q+V ++ KVFN C+
Sbjct: 124 ELSENRQNVLERVKVFNSCS 143


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 270 NFFSTQNIMQGSSDSSIS 217
           NFFSTQN+MQ + +   S
Sbjct: 50  NFFSTQNVMQMNFEDEYS 67


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 359 INDFGSACLESAEATQHKQDVCKKAKVFNECT 454
           + DFGS CL    A+ + + +  + K    CT
Sbjct: 211 LTDFGSICLVPIFASNNSEAIAIQDKASENCT 242


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 312 IENAYSCRSN*LRGIQLTTSEARVSKALKQRSTNKMFARKLKSSTNAHTFIKS 470
           +EN  S        ++ + S+A+ SKA+ Q   +K+ +   ++  N   F KS
Sbjct: 823 LENLQSRALELESALEQSVSDAKYSKAIMQSGLSKLLSSINENKDNLKEFSKS 875


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,711
Number of Sequences: 5004
Number of extensions: 37358
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)