Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k11
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604...    30   1.2  
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953...    29   2.1  
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378...    28   5.0  
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202...    27   8.7  
01_06_1298 - 36099408-36099686,36099760-36099927,36100036-361002...    27   8.7  
01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394...    27   8.7  

>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
            12560848-12561389,12561398-12564827
          Length = 1455

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
 Frame = +2

Query: 185  LNEMYPRSKRLEIEESDEPCIIFCVLKKF-GIMSPTGVINLEAYRKRVQ--LPEQ---LA 346
            ++E++PR +RLEI   D+P I+     K+ G + P   + LE +R+  +  L EQ   L 
Sbjct: 1196 VDELFPRLERLEI---DDPRILSTSFFKYLGSLKP---LELEKHRRGEERLLDEQEKALQ 1249

Query: 347  QRNSINDFGSACLESAE--ATQHKQDVCKKAKVFNECTHLYKI 469
              +S+ +   AC E  +  A  H+    K+ ++++ CT + ++
Sbjct: 1250 HLSSLQELKFACSEFIDFPAGLHRLPSLKRLEIWH-CTRITRL 1291


>03_02_0569 -
           9528027-9529256,9530019-9530260,9530374-9531161,
           9531613-9531953,9532090-9532310,9532392-9532702,
           9532779-9533038,9533691-9533891,9533992-9534167,
           9534242-9534296,9535739-9536146
          Length = 1410

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 283 AHNAELLQYTEYYARLVRLLDFQSFRSRIH 194
           AH A L+ Y  Y+ R + LLD +   S +H
Sbjct: 95  AHGAALVIYLHYFGRSLNLLDSERVESALH 124


>05_05_0106 +
           22435192-22435614,22436880-22436968,22437617-22437814,
           22438475-22438679,22438749-22438916,22439095-22439262,
           22439344-22439534,22440776-22440879,22441285-22441298
          Length = 519

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 268 LLQYTEYYARLVRLLDFQSFRSRIHLVEALICYHITQFIVS 146
           LLQ  E  A    L  F+ F SR+  ++  +C H   F+ +
Sbjct: 400 LLQTKETLASAEELAPFKDFSSRMAAIDYSVCVHSDAFVTT 440


>03_06_0026 -
           31118997-31119113,31119700-31119900,31120032-31120218,
           31120339-31120415,31120738-31120815,31120858-31120974,
           31121047-31121175,31121327-31121479,31121589-31122044,
           31122122-31122239,31122385-31122575,31123140-31123415,
           31123524-31123700,31124040-31124141,31124227-31124459,
           31125563-31125764
          Length = 937

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 131 ISVMYAHDKLSDMIADQCLNEMYPRSKRL 217
           + ++Y + K+ +M A   +N   PR+KR+
Sbjct: 694 LGIVYRYKKMKEMSAKDRINSFVPRAKRI 722


>01_06_1298 -
           36099408-36099686,36099760-36099927,36100036-36100203,
           36100346-36100550,36100683-36100880,36101963-36102048,
           36103730-36104143
          Length = 505

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 268 LLQYTEYYARLVRLLDFQSFRSRIHLVEALICYHITQFIVS 146
           LLQ  E  A    L  F++F SR+  ++  +C H   F+ +
Sbjct: 396 LLQTKETLASDEELAPFKNFSSRMAAIDYTVCVHSEVFVTT 436


>01_06_0338 +
           28538951-28538966,28539073-28539183,28539311-28539479,
           28540841-28541063,28541148-28541204,28541718-28541861,
           28541939-28542019,28543026-28543113,28543579-28543943,
           28544011-28544086,28544174-28544367,28544846-28545009,
           28545080-28545152,28545237-28545350,28545839-28545919,
           28546043-28546102,28546180-28546289,28546325-28546501,
           28546599-28546683
          Length = 795

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 426 LQTSCLCCVASALSRHALPKSLIEFL*AN 340
           L+TS +  V S LS+  LP+ +I+F+ A+
Sbjct: 121 LETSTIISVMSKLSKTKLPREIIDFIHAS 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,657,457
Number of Sequences: 37544
Number of extensions: 211908
Number of successful extensions: 480
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)