Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k11
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              27   0.085
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              26   0.20 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   9.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.7  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 27.5 bits (58), Expect = 0.085
 Identities = 22/100 (22%), Positives = 46/100 (46%)
 Frame = +2

Query: 173 ADQCLNEMYPRSKRLEIEESDEPCIIFCVLKKFGIMSPTGVINLEAYRKRVQLPEQLAQR 352
           + + ++E+Y  +  + +E+ +    + C++KKF ++   G  N +  R  VQ    +   
Sbjct: 40  SQKIIDEVY--NGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKNTRDIVQ---AVLDD 94

Query: 353 NSINDFGSACLESAEATQHKQDVCKKAKVFNECTHLYKIL 472
           N  +     C   ++A  H     K +K+F +C   YK +
Sbjct: 95  NETDQLIVECSPISDANVH----IKISKIF-QCFMKYKTI 129


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 224 EESDEPCIIFCVLKKFGIM-SPTGVINLEAYRKRVQLPEQLAQRNSINDFGSACLESAEA 400
           E+    C   CVL+KF +M    G I     +K   +PE      +  + G   ++S  +
Sbjct: 64  EDEKLKCYFNCVLEKFNVMDKKNGKIRYNLLKK--VIPE------AFKEIGVEMIDSC-S 114

Query: 401 TQHKQDVCKKAKVFNECTH 457
                D C+K+ +F +C +
Sbjct: 115 NVDSSDKCEKSFMFMKCMY 133


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -3

Query: 340 LLRQLYAFSISFQIDDSGRA----HNAELLQYTEYYARLVRLLDFQSFRSRIHLVEAL 179
           +  Q   FS SFQI  +GRA      A+LL       RL RL+ + S    +++++ L
Sbjct: 185 IFNQFQDFSESFQILHAGRALRILRLAKLLSLVR-LLRLSRLVRYVSQWEEVYILQNL 241


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 340 LLRQLYAFSISFQIDDSGRAHNAELLQYTEYYARLVRL 227
           +  Q   FS SFQI  +GRA     L       RL+RL
Sbjct: 185 IFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRL 222


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 340 LLRQLYAFSISFQIDDSGRAHNAELLQYTEYYARLVRL 227
           +  Q   FS SFQI  +GRA     L       RL+RL
Sbjct: 185 IFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRL 222


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 291 PVGLIMPNFFSTQNIMQGSSDS 226
           PVG + P F S  NI   S++S
Sbjct: 205 PVGSVRPKFPSMDNINGLSTES 226


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 438 SSTNAHTFIKSYLNKD 485
           SS+++ + +K YL+KD
Sbjct: 2   SSSDSKSLLKKYLSKD 17


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 438 SSTNAHTFIKSYLNKD 485
           SS+++ + +K YL+KD
Sbjct: 18  SSSDSKSLLKKYLSKD 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,664
Number of Sequences: 438
Number of extensions: 2566
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)