Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k09
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    30   0.43 
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    29   0.57 
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    29   0.99 
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   2.3  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    27   3.0  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    27   4.0  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   5.3  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    26   7.0  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   7.0  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   9.2  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   9.2  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   9.2  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   9.2  

>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 504 SCRIMW-HLYFTQTCRMLRHFFFRLRSYCDNW 412
           SC+  W ++YF +   M +H   R+  YCD +
Sbjct: 243 SCKFPWTYIYFVECLGMEKHLIDRVGKYCDTF 274


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 412 PVITVRTQPKKKVSQHAARLRKIEMPHNPTRGYVDPAS-VEQHMML 546
           PV++  TQPK +     A   K+ M  +P  G + PA+ +E+HM L
Sbjct: 359 PVLSTTTQPKVQKPVPKAFQPKVPMEISPFSGELVPATELEEHMRL 404


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 556 ASLQASYAVQRKQDQHILLSDYVASLFYAD 467
           A LQ  + VQ +     LL+DY++S+ YAD
Sbjct: 536 AFLQEDHIVQFQSISSALLTDYISSVLYAD 565


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 9/114 (7%)
 Frame = +1

Query: 409 IPVITV--RTQPKKKVSQHAARLRKIEMPHNPTRGYVDPASVEQHMMLGEMRGTKNYKPP 582
           +P++T+  R  P+   S  A       +P N  R Y  P+    H        +++ KPP
Sbjct: 8   MPLVTLSERMVPQVNTSPFAPAQSSSPLPSNSCREYSLPSHPSTHNSSVAYVDSQDNKPP 67

Query: 583 EAQRL------KEKPGSA-GYNNYGKNQPRKNYPDGDSMYGAGTQFSSEGPMEV 723
               L         P SA  +N     +P  ++  G S Y + +  +S+ P +V
Sbjct: 68  LVSTLHFSLAPSLSPSSAQSHNTALITEPLTSFIGGTSQYPSASFSTSQHPSQV 121


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 86  YSNISTSPLSCVCYVNFKL 142
           + N STSP+S V YVN KL
Sbjct: 101 FENASTSPVSDVTYVNTKL 119


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 521 LPLNSI*CLERCAVLRTISHRKHSV-*RRNQARRATIIMAKINLEKIIQTGTVC 679
           LPL  I C++R + +R ++  +H+V  +  +      ++ +++++ +IQT   C
Sbjct: 12  LPLRVIYCIDRASAIRCLAKSQHAVPIQVLKEVEPKKVICQVDIQHVIQTVCRC 65


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 680 MELVRSSVARVPWRWLVVMTILYLVTL 760
           +E V    ++ PW W+V+ +IL  V L
Sbjct: 91  LETVDPRFSKTPWDWIVISSILAQVLL 117


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 529 EQHMMLGEMRGTKNYKPPEAQRLKEKPGSAG 621
           EQ+ ++ ++RG   Y P + Q   +KPGS+G
Sbjct: 225 EQNWIINDIRGVC-YNPLKQQWTLDKPGSSG 254


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 567 LSTAHLSKHHMLF--NGSRINISSCRIMWHLYFTQTCRMLR 451
           L  A  S  H+ +  NG+ + +SSC  + + Y TQT  +++
Sbjct: 133 LRPAKASNKHVTYSPNGNFLAVSSCNGILYFYDTQTRELIK 173


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 412 PVITVRTQPKKKVSQHAARLRKIEMPHNPT 501
           P  TVR+  K+  S H++++ K  +P +PT
Sbjct: 252 PQKTVRSIVKQTSSPHSSKMPKHSLPSSPT 281


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 454 QHAARLRKIEMPHNPTRGYVDPASVEQHMMLGEMRGTKNYKPPEAQRLK 600
           Q++  + + EMP + TR Y  PA+     +  E    K+ KPP+ +  K
Sbjct: 466 QNSLSVHESEMPPHVTRDYTQPAA-SATPVPKEKPSEKSEKPPKKKGSK 513


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 38  FISVPPFLYLIIKSFVYSNI 97
           +I++PP +Y+ + S +Y N+
Sbjct: 113 YIALPPSVYVTVSSHIYENL 132


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 427 RTQPKKKVSQHAARLRKIEMPHNPTRGYVDPAS 525
           R QP   +  HA+  RK   P  P  G+  P S
Sbjct: 117 RRQPSSFLDVHASNTRKRGSPDTPDSGHSTPHS 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,898
Number of Sequences: 5004
Number of extensions: 59636
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)