Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k07
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    30   0.31 
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    30   0.41 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   5.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   5.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   8.8  

>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 543 NFCDSVRYLGSKRYVHNFPCQAFAHSVQSIMNVVLTESNQTTYFKV 406
           +FC+ + ++G+K+Y      + +  S   I N     +N   YF+V
Sbjct: 68  HFCEHLLFMGTKKYPDENEYRKYLESHNGISNAYTASNNTNYYFEV 113


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -1

Query: 603 LRIFYVLL-VPLLFVSKHCFYNFCDSVRYLGSKRYVHNF-PCQAFAHSVQSI 454
           L I Y+L   P    +KHCF ++ D  R + +K    +F PC+ F H+ QS+
Sbjct: 12  LTISYLLYRFPNTNQTKHCFQSYIDYFRCIKAKG--EDFVPCKQFWHAYQSL 61


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 590 MFYSCLYCSSPNTVSITFATVLDI 519
           M+ S L C   NTVSITF   +D+
Sbjct: 466 MYRSTLVCPVCNTVSITFDPFMDL 489


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 555 HCFYNFCDSVRYLGSKRYVHNFPCQAFAHSVQSIMNV 445
           H F+NF  S  + GSK  + +FP +    S  ++ N+
Sbjct: 199 HEFHNFLPSSIFFGSKPPLGSFPLRGIQSSQFTLSNI 235


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 391  LKITDYLKISRLIRFRKNYVHNRLDTVGEGLTRKIMDI 504
            L + +YL     + F+K  + NRL T     T+ + D+
Sbjct: 1288 LSLENYLDAFNQVNFKKMELDNRLTTTDAEFTKVVADL 1325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,005
Number of Sequences: 5004
Number of extensions: 57155
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)