Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k07
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    31   0.88 
AF014939-2|ABA00177.1|  537|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    28   6.2  
AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine r...    28   8.2  

>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
 Frame = -1

Query: 642 ILVFPNGLI*HVFLRIFYVLLVPLLFVSKHCFYNFCDSVRYLGSKRYV--HNFPCQAFAH 469
           IL++   L    +L I + LLV LL +SK   Y +  + RY+   +Y     +    F++
Sbjct: 116 ILIYSQVLTILTYLTITFQLLVSLLAISKFLIYFYPSTERYVVLSKYKIWACYLISLFSY 175

Query: 468 SVQSIMNVVLTESNQTTYFKVICYLKSQLL*SELLWSP 355
            ++ + ++++   +      +I +    L+ + LL+ P
Sbjct: 176 DIEEVFDLLIGFDSPILTEDIIRFHSILLIATSLLYIP 213


>AF014939-2|ABA00177.1|  537|Caenorhabditis elegans Hypothetical
           protein ZC132.3b protein.
          Length = 537

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 227 LNYQANQNS*TFSPIFLSPTNQIKSCMKFPYSI*FSD-IEFV 349
           +NY+   +    S +FL PT Q+     FPYS+ F   +EF+
Sbjct: 258 INYEIIMSIFVTSDLFLVPTEQMIKLNIFPYSLSFDKFVEFI 299


>AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical
           protein ZC132.3a protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 227 LNYQANQNS*TFSPIFLSPTNQIKSCMKFPYSI*FSD-IEFV 349
           +NY+   +    S +FL PT Q+     FPYS+ F   +EF+
Sbjct: 258 INYEIIMSIFVTSDLFLVPTEQMIKLNIFPYSLSFDKFVEFI 299


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 606 FLRIFYVLLVPLLFVSKHC 550
           F  IFYVL++  LFV KHC
Sbjct: 282 FFDIFYVLILFKLFVLKHC 300


>AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein5 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 599 GYFMFYSCLYCSSPNTVSITFATVLDILVRNDMSIIFL 486
           GYF FY   +C  P  + IT + ++   V N ++ I +
Sbjct: 93  GYFAFYGVSFCQQPIFLFITGSFIIGCWVSNCVASILM 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,251
Number of Sequences: 27780
Number of extensions: 318254
Number of successful extensions: 697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)