Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30k06
(269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce... 47 4e-07
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 24 4.3
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 24 4.3
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 23 5.7
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 23 5.7
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 23 5.7
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 23 5.7
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 23 7.5
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 23 9.9
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 23 9.9
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 23 9.9
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 23 9.9
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 23 9.9
>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 122
Score = 47.2 bits (107), Expect = 4e-07
Identities = 26/73 (35%), Positives = 36/73 (49%)
Frame = +2
Query: 50 VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 229
+K ELR + +LRV K+ GG SKLSKI+ RK IAR+ V ++
Sbjct: 3 LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62
Query: 230 KMKVNLRNHYKKK 268
++ R YK K
Sbjct: 63 SNRLAAREAYKNK 75
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 23.8 bits (49), Expect = 4.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 262 FVVVSKIDLHLLVIHNVNTC 203
F+V+SK+DL L + N N C
Sbjct: 362 FLVLSKLDLMHLSVSNDNDC 381
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 23.8 bits (49), Expect = 4.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 199 SFSYNTDLGQFRSNSTSNFSNPK 131
+F+Y+ D G FR + +NF +P+
Sbjct: 262 AFNYHFDNGVFRGLAFANFHSPE 284
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 23.4 bits (48), Expect = 5.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 223 IHNVNTCDSFSYNTDLGQFRSNSTSNFSNP 134
+ N NTCDS S++++ + ++ + NP
Sbjct: 454 LSNFNTCDSLSFSSNNSLYGYSTLLHPRNP 483
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 193 SYNTDLGQFRSNSTSNFS 140
SYN+ G+F S+ST N S
Sbjct: 138 SYNSTHGEFYSDSTLNIS 155
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 23.4 bits (48), Expect = 5.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 209 HVR*LFLQHGSWTV*KQLHQ 150
H R LFL+ WTV K L+Q
Sbjct: 397 HFRYLFLKTVFWTVRKNLYQ 416
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 247 KID-LHLLVIHNVNTCDSFSYNTDLGQFRSNSTSNFSN 137
K+D +++ V+H+ D +++ D G ++ S F+N
Sbjct: 323 KVDRVNVPVVHDTTAFDPSTFDDDDGHYKVVPNSKFAN 360
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 23.0 bits (47), Expect = 7.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 250 SKIDLHLLVIHNVNTCDSFSYNTDL 176
S+I LH + +H++NT Y+ L
Sbjct: 14 SRITLHGIKVHSINTFRLIPYSLSL 38
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 134 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYK 262
R+ + G KLS + RK I + ++QK ++L ++++
Sbjct: 250 RIRALASGFTLKLSGNEINRKLIGFMKNSFYQKHGIDLSHNHR 292
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 199 SFSYNTDLGQFRSNSTSNFSNPK 131
+F+Y+ D G FR + +NF P+
Sbjct: 232 AFNYHYDNGIFRGLAFANFYRPE 254
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 22.6 bits (46), Expect = 9.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -3
Query: 210 TRAIAFLTTRILDSLEATP---PVTLATR 133
T+AIA+ T DS TP P++L R
Sbjct: 36 TKAIAYTTWNFFDSSPVTPQRNPISLFVR 64
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 197 AIARVYIVYHQKMKVNLRNHYK 262
++ +V+I H+K ++R HYK
Sbjct: 224 SVLKVHISSHEKQVSDVRFHYK 245
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 226 VIHNVNTCDSFSYNTDLGQF-RSNSTSNFSN 137
++H++NT D +Y T G+F +S F N
Sbjct: 535 MLHHINTTDYLNYET--GKFSKSRGVGVFGN 563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 897,540
Number of Sequences: 5004
Number of extensions: 12221
Number of successful extensions: 40
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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