Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k01
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    38   8e-05
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.2  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 38.3 bits (85), Expect = 8e-05
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
 Frame = +2

Query: 278 DKTCLITGANSGVGLEMTKCLNLCGCTVLMACRNTYAASVVAKNTCLKPDSLRLYELNLA 457
           D+  L+TGANSG+G  + +CL   G  V+           + +    KP  L   + +L+
Sbjct: 7   DEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLS 66

Query: 458 SLRSVRKCSDDLLNKEKKIDIVILNAGI---FGLPWTETVDKLEITFQVNYLSQYYLLMN 628
           +   + K  + +      IDI+I NA I     L   E +D  +I F +N L    ++  
Sbjct: 67  NQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKI-FDINLLGLTCMIQE 125

Query: 629 IEDILAD---NARVVIISSESHRYVTLPFN 709
           +  ++     N  +++  +++     LP N
Sbjct: 126 VLKLMKKKGINNGIIVNINDASGLNLLPMN 155


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 536 QHSG*QYQF-FFLYLKDHQSIFAQI 465
           +H+  Q +F +F  LKDHQ  FA++
Sbjct: 113 EHASNQERFGYFSSLKDHQHQFAEL 137


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 260 KGLDLKDKTCLI--TGANSGVGLEMTKCLNLCGCTVLM 367
           KGL LK    +I  T  N+G+GL M   +    C ++M
Sbjct: 92  KGL-LKPGCTIIEPTSGNTGIGLAMAAAVRGYKCIIVM 128


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 143 NLILNDKVRAFSSSKVKSLVE---NYFDLNFRIHGPTGEEVTK 262
           N  + D+     S++++ +V    N+ D+NFRI G   +E+ +
Sbjct: 368 NKPVKDEYMLVLSNRMQKIVNDDFNFDDVNFRILGANVKELIR 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,280
Number of Sequences: 438
Number of extensions: 4264
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)