Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j23
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    81   2e-16
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    60   4e-10
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    29   0.63 
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    28   1.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   7.7  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
 Frame = +2

Query: 161 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 340
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 341 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 517
           +    IL K    S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115

Query: 518 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED-PVNHHFISFV----QKDGALYE 682
           G     R KL+E S+ +   H   A        S ED   + HFI FV    + D   YE
Sbjct: 116 GSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYE 175

Query: 683 L 685
           L
Sbjct: 176 L 176


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
 Frame = +2

Query: 164 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 343
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 344 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 523
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGT-TLSEFKDFSKTL 115

Query: 524 DATARGKLLEKSEGIINAHKELAQEG-----QTNTPSAEDPVNHHFISFVQKDGALYEL 685
               +G+ L  SE I   H   A+       +    + ED V +HFI++   +   YEL
Sbjct: 116 PPELKGEALGNSEHIRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYEL 173


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +2

Query: 116 QLFYRVTEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSW 271
           Q+F   ++  +E  +PLES PD L K +        K+G    W I V V    PE   W
Sbjct: 312 QMFCYFSQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECW 371

Query: 272 V 274
           +
Sbjct: 372 L 372


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 66  LRRYFFICHC-RCTGNLLSYFTE*LKWRPKL 155
           L++YFF C+C RC  +  +  T+  KW  +L
Sbjct: 242 LKKYFFSCYCPRCENDHTTKETDGSKWMGRL 272


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +2

Query: 569 INAHKELAQEGQTNTPSAEDPVNHHFISFVQ 661
           ++A + L ++ +++T + E+PV+HH  S V+
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHHLKSPVR 367


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 169 FKRD*SFGRHFSHSVK*LSRLPVHRQ*QMKKYLRRFTIELKTYQIV 32
           F+R+ S  R+F++ V  + RL   R+ ++  YL + T  L  Y ++
Sbjct: 554 FEREKSTNRNFANYVHEVERLRESRKLELNGYLTKPTTRLARYPLL 599


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +2

Query: 455 NNTDIIELSDGHMQ-KFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDP 631
           +NT+++   +  ++ K ++  K +D +  G  L + E    +H +    GQ      +DP
Sbjct: 31  SNTNMLSTEENIVKAKAVSRKKPVDVSYAG--LARHE----SHVDTDYHGQALNTDNQDP 84

Query: 632 VNHHFISFVQKDGALYE 682
            N+   SFV K+  LYE
Sbjct: 85  KNYQARSFV-KENELYE 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,307
Number of Sequences: 5004
Number of extensions: 60815
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)