Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j23
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin c-t...   126   1e-29
AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...   122   3e-28
AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin c-t...   120   7e-28
Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical pr...    58   6e-09
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    32   0.44 
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    32   0.44 
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    32   0.44 
U88308-10|AAB42326.2|  268|Caenorhabditis elegans Hypothetical p...    31   0.58 
Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      28   5.4  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    28   5.4  
Z81543-5|CAB04427.2|  507|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 3 protein.
          Length = 227

 Score =  126 bits (305), Expect = 1e-29
 Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 2/176 (1%)
 Frame = +2

Query: 164 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 343
           LESNP+ +N FL+K+G+      VDV   D E L +VP P L+++L FP ++A E   K 
Sbjct: 12  LESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQ 70

Query: 344 EENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 517
            E E+   G++  G +F+M Q+  I NACGT AL HS+AN  + + L  G   K+  +AK
Sbjct: 71  YE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAK 128

Query: 518 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYEL 685
            ++   R  LL     +  AH+E A+EG+T      D V++HFI++V K+G LYE+
Sbjct: 129 LVNEDERSDLLSGDTDLAEAHEETAEEGET---EQSDHVDYHFITYVNKNGQLYEI 181


>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score =  122 bits (293), Expect = 3e-28
 Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
 Frame = +2

Query: 164 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 343
           LESNP+ +N FL K+GV      VDV   D E L ++P P L+++L FP S   E   K 
Sbjct: 11  LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQ 69

Query: 344 EENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 517
            E E+   G++  G IF+M  K+ I +ACGT +L HS+AN  + + L +G   K+  +AK
Sbjct: 70  YE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAK 127

Query: 518 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYEL 685
            +    R  LL     +  AHKE A+EG+T  P   + V +HFI++V K+G L+E+
Sbjct: 128 LVGEGERSDLLLADTDLAEAHKETAEEGETEHP---EHVAYHFITYVNKNGQLFEI 180


>AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 1 protein.
          Length = 216

 Score =  120 bits (290), Expect = 7e-28
 Identities = 73/177 (41%), Positives = 99/177 (55%), Gaps = 2/177 (1%)
 Frame = +2

Query: 161 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 340
           PLESNP V+N  ++K+GV      VDV+  D E++    +P  +V+L FP       +KK
Sbjct: 7   PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKK 56

Query: 341 TEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 514
            +E    I  + +    ++F+MKQ ISNACGT AL HS+AN  D I L DG   K+L EA
Sbjct: 57  VDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEA 116

Query: 515 KGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYEL 685
           K +    R   L  +  +   H   A +GQT  PS +  V HHFI FV K+G LYE+
Sbjct: 117 KKVGIEERSDFLANNAELAGIHAAAATDGQT-APSGD--VEHHFICFVGKNGILYEI 170


>Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical
           protein C08B11.7 protein.
          Length = 321

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 2/176 (1%)
 Frame = +2

Query: 164 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 343
           +ES+P V  + L+  GV     + ++  LD +    + RP   ++ LF         ++ 
Sbjct: 10  IESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQG 59

Query: 344 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 523
           +E   +   ++   NIF+  Q I NAC T AL++ + N  D        + ++   A  L
Sbjct: 60  DETTGIPSDKQ---NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDL 116

Query: 524 DATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYEL 685
           D   RG  L  SE I   H   +++   + +    E   N+HF+++V     +YEL
Sbjct: 117 DPNTRGHCLSNSEEIRTVHNSFSRQTLFELDIKGGESEDNYHFVTYVPIGNKVYEL 172


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 476  LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 622
            L+ GH++KF+     LD   R  + E+S+G+++   ++   G    P+A
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1099


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 476  LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 622
            L+ GH++KF+     LD   R  + E+S+G+++   ++   G    P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 476  LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 622
            L+ GH++KF+     LD   R  + E+S+G+++   ++   G    P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070


>U88308-10|AAB42326.2|  268|Caenorhabditis elegans Hypothetical
           protein C32E8.9 protein.
          Length = 268

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +2

Query: 449 VANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 628
           + ++TDI     G    F     G+  +  G   E  EGI+   + LA  G+ N  SAE+
Sbjct: 135 ICSSTDIRIAHSGSKIAFFQSKMGIVPSWGGA--EYMEGIMGRGRALAAMGRANVMSAEE 192

Query: 629 PVNHHFISFVQK 664
             +  ++ +V K
Sbjct: 193 AKDQGYVDYVYK 204


>Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical
           protein T07D4.4c protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 125 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 262
           Y+ T+ ATE     VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 155 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 203


>Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical
           protein T07D4.4b protein.
          Length = 638

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 125 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 262
           Y+ T+ ATE     VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 180 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 228


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 125 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 262
           Y+ T+ ATE     VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 564 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 612


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +2

Query: 317 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 484
           DA++   K    E+L  G  + G++   K+  S    T  +V  + N     TD   L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373

Query: 485 --GHMQKFLNEA-KGLDATARGKLLEK 556
             GHM+  L +  K LD  +R K + K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHKPVVK 400


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +2

Query: 317 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 484
           DA++   K    E+L  G  + G++   K+  S    T  +V  + N     TD   L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359

Query: 485 --GHMQKFLNEA-KGLDATARGKLLEK 556
             GHM+  L +  K LD  +R K + K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHKPVVK 386


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +2

Query: 317 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 484
           DA++   K    E+L  G  + G++   K+  S    T  +V  + N     TD   L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362

Query: 485 --GHMQKFLNEA-KGLDATARGKLLEK 556
             GHM+  L +  K LD  +R K + K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHKPVVK 389


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -1

Query: 664 FLDKADKMMVDGIFST--WCICLAF 596
           F+D  D M+VDG  S   WC C  F
Sbjct: 116 FIDMCDDMVVDGSISVDEWCDCFTF 140


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -1

Query: 664 FLDKADKMMVDGIFST--WCICLAF 596
           F+D  D M+VDG  S   WC C  F
Sbjct: 124 FIDMCDDMVVDGSISVDEWCDCFTF 148


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 3   FY*LITFINSTIWYVFNSIVN 65
           F+ L+  +N+++W++ NS+VN
Sbjct: 136 FWILLVILNASVWFLLNSLVN 156


>Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical
           protein F12F6.8 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 118 LSRLPVHRQ*QMKKYLRRFTIELKTYQIVELMK 20
           L R+P H   Q+++YL  +++  K  +IV L K
Sbjct: 572 LERVPTHLTDQIREYLANYSLRTKFRKIVSLSK 604


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 239 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 415
           +M +   T +W+    L   ++  +  A  +H   T +N +++ G   S  +   +    
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320

Query: 416 NACGTIALVHSVANNTDIIELSDGH 490
               T+    +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 239 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 415
           +M +   T +W+    L   ++  +  A  +H   T +N +++ G   S  +   +    
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320

Query: 416 NACGTIALVHSVANNTDIIELSDGH 490
               T+    +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 239 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 415
           +M +   T +W+    L   ++  +  A  +H   T +N +++ G   S  +   +    
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307

Query: 416 NACGTIALVHSVANNTDIIELSDGH 490
               T+    +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332


>Z81543-5|CAB04427.2|  507|Caenorhabditis elegans Hypothetical
           protein F49B2.5 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 380 SGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKG 520
           SGN     QNIS +   +AL    A   D +      + + LN+ +G
Sbjct: 46  SGNTIDKNQNISQSANFVALFQYDARTDDDLSFKKDDILEILNDTQG 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,199
Number of Sequences: 27780
Number of extensions: 330244
Number of successful extensions: 982
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)