Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30j19
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 1.3
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.3
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 27 1.7
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPBC8D2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 25 3.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 25 6.8
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 25 6.8
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 24 9.0
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 9.0
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 24 9.0
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 24 9.0
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 164 RYEDFVMECDNAFEVIKMLFEIILRKYLPHSWN 262
RY F++ N+F+ I +L +++L K WN
Sbjct: 33 RYPRFLLRAYNSFDGIYLLVKLLLEKSQLKKWN 65
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 1.3
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 225 SNNILITSKALSHSITKSSYLPDDKFLITHTLTESVGSTCTTNRENFLQKI 73
SNN L +ALS + + DD T LTES+GS C + F Q +
Sbjct: 646 SNNTL---RALSQDLKNCAKSKDDS--TTQNLTESLGSVCYPSMPFFNQYV 691
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.6 bits (56), Expect = 1.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 268 ITVP*MRKIFSQDNFKQHLNHLKSIVALHHEI 173
+ +P M + +D +QH+NH K+I +L +
Sbjct: 859 LQIPDMGDFYYRDGGEQHVNHPKAIASLQDAV 890
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 26.6 bits (56), Expect = 1.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 204 SKALSHSITKSSYLPDDKFLITHTLTESVGSTCTTNRENFLQKI 73
+K S ++YL D + LI T T +T T N +QKI
Sbjct: 92 NKLYQRSCDNANYLQDLRSLILQTPTAEANATQVTESLNQIQKI 135
>SPBC8D2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 3.0
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +2
Query: 29 MAQYCVRRGGVSYVQIFCRKFSRLVVHVLPTLSVKVCVMRNLSSGRYEDFVMECDNAFEV 208
M + + +V F RK +L+ L + ++ L + +E+FV D V
Sbjct: 1 MGRPLIESSSNDHVANFNRKTKKLIDQALEHYNGRL--PEQLENFSFENFVEVLDTESSV 58
Query: 209 IKMLFEIILRK 241
+ +FE+++R+
Sbjct: 59 VNRVFEVLVRE 69
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -3
Query: 275 LNYNSSMNEEDIFAR*FQTTS*SPQKHCRTPSRNPRIYQM 156
+N ++ N D+ +Q+ + P+ R+ + NP +YQ+
Sbjct: 6 VNADTPKNTNDVLNGAYQSATTEPEGQYRSATDNPSLYQV 45
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 189 HSITKSSYLPDDKFLITHTLTESVGSTCTTNREN 88
H++TK+ FL HT S G C+ +R +
Sbjct: 205 HTLTKAISENSFDFLSIHTFNSSTGEGCSGSRNS 238
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 9 KRQAKEKWLSTAYAEEASVTCKS 77
+R+A EKW S+ +E S C+S
Sbjct: 105 EREAPEKWKSSQVFKELSKYCRS 127
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 232 DNFKQHLNHLKSIVALHHEILVSTR*QISHNTH 134
+NF Q LN L S + L ++L I N+H
Sbjct: 326 ENFDQFLNKLTSPIELVVDVLTGFHPSIDKNSH 358
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 296 DFNVVRILNYNSSMNEEDIFA 234
DFN +R NY SS N F+
Sbjct: 258 DFNRIRFYNYESSENSVAFFS 278
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 9.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 222 NNILITSKALSHSITKSSYLPDDKFL---ITHTLTESVGSTCTTNR 94
N++ + +LS +ITK P+ ++ + LTE STC+ NR
Sbjct: 342 NSLAFITSSLS-AITKEPEAPETEYNPHGVFTLLTECYSSTCSRNR 386
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 24.2 bits (50), Expect = 9.0
Identities = 7/28 (25%), Positives = 16/28 (57%)
Frame = +2
Query: 194 NAFEVIKMLFEIILRKYLPHSWNCYNLI 277
+++ ++ +F ++RK H W YN +
Sbjct: 764 SSWAIVGFIFNYVIRKRAIHWWRKYNYV 791
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 243 YFRKIISNNILITSKALSHSI 181
Y +K+ N+LITS LS SI
Sbjct: 475 YLKKLDERNLLITSTGLSLSI 495
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,457
Number of Sequences: 5004
Number of extensions: 31698
Number of successful extensions: 83
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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