Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j19
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0101 - 25581800-25581943,25582030-25582095,25582268-255823...    28   3.8  
04_04_0479 - 25524753-25525426,25525736-25525819,25526255-255264...    28   3.8  

>05_06_0101 -
           25581800-25581943,25582030-25582095,25582268-25582390,
           25582635-25582722,25582823-25582920,25583088-25583147,
           25583228-25583288,25583374-25583505,25583957-25584167,
           25584515-25584648,25584907-25584989,25585077-25585142,
           25585552-25585607,25585701-25585800,25586313-25586421,
           25586499-25586653,25586767-25586937,25587129-25587212,
           25587261-25587345,25587431-25587477,25587912-25588124
          Length = 761

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -2

Query: 246 RY-FRKIISNNILITSKALSHSITKSSYLPDDKFLITHTLTESVGSTCTTNRENFLQKIC 70
           RY F  +++ +   T  +   SIT SS+ P D F +     E   +   TNR      IC
Sbjct: 61  RYPFADLVTKSRRQTKVSAGDSITVSSFAPPDDFKLALLTLELEYTKARTNRNEECNLIC 120

Query: 69  T*LTPPL 49
             L   L
Sbjct: 121 MSLVSQL 127


>04_04_0479 -
           25524753-25525426,25525736-25525819,25526255-25526483,
           25526910-25527357,25528462-25528569,25528681-25528806,
           25528887-25528981,25529062-25529147,25529253-25529408,
           25529523-25529766
          Length = 749

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 14  AGQREMAQYCVRRGGVSYVQIFCRKFSRLVVHVL 115
           +GQ  M   C+  GG S   +   KF   VVH++
Sbjct: 499 SGQNNMKILCIGHGGGSLPLVLASKFRGAVVHIV 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,395,340
Number of Sequences: 37544
Number of extensions: 162092
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)