Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j19
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.21 
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   3.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 380 INFQKNNNYLYLMTTCMIKILKTSTKWNDFNVVRILNYN 264
           IN  + N Y+  ++  M KI+     +ND N  RIL  N
Sbjct: 372 INDPEGNEYMLALSNRMQKIINNDFNFNDVN-FRILGAN 409


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = -2

Query: 225 SNNILITSKALSHSITKSSYLPDDKFLITHTLTESVGSTCTTNRENFLQKIC 70
           ++N+    + +S  I    + P     ITH +   +  T  T   N   K+C
Sbjct: 6   NSNMTEFEENVSFDIDDPDFAPSKNTTITHNILRGMQFTDITFGVNKWSKVC 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,125
Number of Sequences: 438
Number of extensions: 1941
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)