Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j17
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976...    33   0.17 
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366...    33   0.22 
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312...    33   0.29 
11_06_0473 - 23992243-23992542,23993737-23993796                       30   1.5  
12_01_1033 + 10629897-10632311,10633874-10633879                       29   3.6  
05_02_0073 + 6336649-6336710,6336846-6336894,6338079-6338468,633...    29   4.7  

>07_03_0873 +
           22194172-22195434,22195534-22195670,22197531-22197639,
           22197739-22197865,22197952-22198012,22199332-22199722
          Length = 695

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 549 PVAGTPDESIISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPA 689
           P     D    + EE PP      RR+   A +  P EDD +EG PA
Sbjct: 195 PEGEASDAEENASEESPPSPPTRGRRRKRAATSDPPPEDDEEEGTPA 241



 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 555 AGTPDESIISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPA 689
           A T D     DEEE   A+   R+++  ++   P EDD +EG PA
Sbjct: 224 AATSDPPPEDDEEEGTPAQPRRRKRAATSDP--PPEDDEEEGTPA 266


>09_02_0053 -
           3665202-3665900,3666109-3666359,3666612-3666938,
           3667017-3667242,3667328-3667846,3668789-3668863,
           3668963-3669052,3669142-3669222,3672176-3672222,
           3672620-3672685,3673834-3673930,3673983-3674046,
           3674160-3674278,3674448-3674563,3676675-3676708
          Length = 936

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 453 SYLLEQPGD--VINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARFNNRR 626
           +Y ++Q  D  +++  ++FF +LQ   + +   G     P      D+E   +  FN+  
Sbjct: 699 TYNVDQINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDNFNDM- 757

Query: 627 KSVFAETYDPEEDDSDE 677
            S +AET  P+ +DSD+
Sbjct: 758 -STYAETKYPQGEDSDK 773


>08_02_0911 +
           22530370-22530497,22531083-22531126,22531224-22531267,
           22531428-22531946,22532032-22532257,22532336-22532662,
           22532915-22533165,22533374-22534072
          Length = 745

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 453 SYLLEQPGD--VINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARFNNRR 626
           +Y ++Q  D  +++  ++FF +LQ   + +   G     P      D+E   +  FN+  
Sbjct: 508 TYNVDQINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDTFNDM- 566

Query: 627 KSVFAETYDPEEDDSDE 677
            S +AET  P+ +DSD+
Sbjct: 567 -STYAETKYPQGEDSDK 582


>11_06_0473 - 23992243-23992542,23993737-23993796
          Length = 119

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +3

Query: 441 EFTISYLLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARFNN 620
           +    YL      +++  ++FF +LQ   + +   G     P  +   D+E       N+
Sbjct: 13  QMEFKYLKINGRGILSKPIQFFDKLQELFSGSSANGTYMQDPSSATDFDDETEDFDFLND 72

Query: 621 RRKSVFAETYDPEEDDSDE 677
              S +AET  P+ +DSD+
Sbjct: 73  M--STYAETKVPQGEDSDK 89


>12_01_1033 + 10629897-10632311,10633874-10633879
          Length = 806

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 500 VLHKVTKQQDDDHRTGSCRRH 562
           V H      DDDHRT  CR H
Sbjct: 226 VAHPADDDDDDDHRTRRCRTH 246


>05_02_0073 +
           6336649-6336710,6336846-6336894,6338079-6338468,
           6338677-6338902,6338983-6339270,6339594-6339967,
           6340044-6340736
          Length = 693

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +3

Query: 435 LLEFTISYLLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARF 614
           L + T+  LL     +++  ++FF +LQ   +     G     P  +   D+E+    +F
Sbjct: 454 LSQATLDALLINDRGILSKPIQFFDKLQELFSGCSADGAFMEDPSSAADFDDEDDEDDKF 513

Query: 615 N-NRRKSVFAETYDPEEDDSDE 677
           +     S +A+T  P+ +D D+
Sbjct: 514 DFLNDMSTYADTKVPQGEDFDK 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,861
Number of Sequences: 37544
Number of extensions: 363578
Number of successful extensions: 866
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)