Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30j15
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 29 0.48
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 29 0.83
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 1.1
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.5
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 27 1.9
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 2.5
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 7.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.8
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 7.8
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 25 7.8
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 333 KSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNW---ELSKAAEEMKNNI 476
+S+ + +W+KY E +R ++ + +P +W + S + E M NN+
Sbjct: 33 RSDPRWLKWEKYLREFDMTREGNVTNTPKAIPSSWNPNDKSDSLELMNNNM 83
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 562 GTQGPYVRSTRSPWRRANTQRRDFEVPFVMLFF 464
GTQG Y+ ++ W NT DF P + FF
Sbjct: 125 GTQGEYIEFKKTIWHEQNTDGSDF--PSMKTFF 155
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +3
Query: 330 KKSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNWELSKAAEEMKNNITNGTSKSRR 503
K + Y +W+ E ++ +++ + +Q P N EL++ +E + + TSK ++
Sbjct: 4 KGKKSGYADWEDDLGEDISGQNEYLDNTSQDSPQNDELAEKSENLAVSSEKTTSKKKK 61
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 330 KKSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNWELSK-AAEEMKNNITNGTS 491
++SEE Y+E ++ +V++ SD ++ + WE+ A EE N++ + S
Sbjct: 844 QESEEEYEEVEQSLMDVVDEMSDLAESVPEEEVDGWEVEDLAPEEAVNDVVDDAS 898
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 231 LVLGSDCKSESGSNTDSEMAATYPHEDAADLAY 329
L + SDC S S+ + T H+DA D+ Y
Sbjct: 351 LSVSSDCPSRHSSDIRNHSCPTLYHDDAEDIYY 383
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 331 LYARSAASS*GYVAAISLSVFEPDSDLQSEPNT 233
+Y R++ ++ V+ +S F+P+S + +EPNT
Sbjct: 125 VYQRASTNTQQQVSNVSHGNFKPNSSVNTEPNT 157
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 496 DFEVPFVMLFFISSAAFDNSQFIGNPCVMVSMLSLLEFITSLQYLSHSWYVS 341
D V F ++S +N++F+ M+ SLL+F+ ++ Y +W+ S
Sbjct: 915 DLWVAFWTNSSVNSPDVNNNKFLFVYGTMLLAYSLLDFLRTVSYDRGAWWAS 966
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 385 FITSLQYLSHSWYVSSDFLYARSAASS*GYVAAISLSVFEPD 260
FI SL++L SW S+ ++ + Y A+ L V+ PD
Sbjct: 2704 FIHSLRFLKDSWLSSNQQKMLKNQGMAYIYFASGMLLVYVPD 2745
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 339 RTSCMPDRRRLREDMSRPFHYRCSNPIQIYNPS 241
+T RRR R +RP HY+ + Q+YN S
Sbjct: 462 KTKSKLQRRRRRRHEARPLHYQLN---QMYNSS 491
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 607 RFKSFRT*VSFSKQCGTQGPYVRSTRSPWRRANT 506
R+K F + + + C T+G S+ P+RR+ T
Sbjct: 37 RYKKFDSYEAAQEFCRTEGSRYSSSSGPYRRSTT 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,400
Number of Sequences: 5004
Number of extensions: 56514
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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