Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j14
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...   104   7e-24
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    29   0.44 
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    25   7.2  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   7.2  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score =  104 bits (250), Expect = 7e-24
 Identities = 52/110 (47%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
 Frame = +2

Query: 164 SIXNLNTFXPFXDAIKSSEDDVQX-GLVHVRIQQRNGRXTLTTXQGLSSEYDLXKIXRAC 340
           +I N NT  PF D   + +DD Q    +H+RIQQRNGR TLTT QGL  E+D  +I RA 
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59

Query: 341 XKEFAXNGTVXEHPEYGEXLQLQGDQRXNICQXLTKSGLVKPEQLKXHGF 490
            K+FA NGT+ +  + GE +QLQGDQR  + + LT+   ++ + +K HGF
Sbjct: 60  KKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 205 SIGEWVECVEIXDGHTIERRVXLFQR 128
           S+  W+  ++  +G T+E+RV LF+R
Sbjct: 31  SLKSWLRYIKTHEGSTLEKRVLLFER 56


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 203 AIKSSEDDVQXGLVHVRIQQRNGRXTLTTXQGLSS 307
           AI     D +  + H R+Q +N R T    QG+ S
Sbjct: 77  AISGLTADARTIIEHARVQTQNHRFTYDEPQGIES 111


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 520 GHVMF*QGGLETVXLELFRLH*AGFGEP 437
           GH M    G  TV L+L ++H  GF +P
Sbjct: 268 GHKMVMSIGGSTVDLDLVQIHPTGFVDP 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,566
Number of Sequences: 5004
Number of extensions: 19664
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)