Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30j14
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 104 4e-23
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 102 2e-22
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 94 6e-20
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 89 2e-18
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 29 1.8
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 4.1
>07_03_0685 - 20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 104 bits (250), Expect = 4e-23
Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 3/105 (2%)
Frame = +2
Query: 185 FXPFXDAIKSSEDDVQXG---LVHVRIQQRNGRXTLTTXQGLSSEYDLXKIXRACXKEFA 355
F PF +A + + G VHVRIQQRNGR +LTT QGL E+ KI + KEF
Sbjct: 737 FDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFC 795
Query: 356 XNGTVXEHPEYGEXLQLQGDQRXNICQXLTKSGLVKPEQLKXHGF 490
NGTV + PE G+ +QLQGDQR N+ L ++G+VK E +K HGF
Sbjct: 796 CNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 102 bits (245), Expect = 2e-22
Identities = 46/83 (55%), Positives = 57/83 (68%)
Frame = +2
Query: 242 VHVRIQQRNGRXTLTTXQGLSSEYDLXKIXRACXKEFAXNGTVXEHPEYGEXLQLQGDQR 421
VHVRIQQRNGR +LTT QGL EY KI + KEF NGTV + PE G+ +QLQGDQR
Sbjct: 23 VHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR 82
Query: 422 XNICQXLTKSGLVKPEQLKXHGF 490
N+ L ++G+ K + +K HGF
Sbjct: 83 KNVATFLVQAGIAKKDNIKIHGF 105
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 94.3 bits (224), Expect = 6e-20
Identities = 41/83 (49%), Positives = 55/83 (66%)
Frame = +2
Query: 242 VHVRIQQRNGRXTLTTXQGLSSEYDLXKIXRACXKEFAXNGTVXEHPEYGEXLQLQGDQR 421
VHVR+QQRNGR TLTT QG+ EY+ K+ R +E NG V E E G+ +QLQGD R
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDHR 557
Query: 422 XNICQXLTKSGLVKPEQLKXHGF 490
++ L K+G+V+ + +K HGF
Sbjct: 558 NSVSDFLAKAGMVRKDNIKVHGF 580
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 89.4 bits (212), Expect = 2e-18
Identities = 46/97 (47%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Frame = +2
Query: 179 NTFXPFXDAIKSSEDDVQXG---LVHVRIQQRNGRXTLTTXQGLSSEYDLXKIXRACXKE 349
+ F PF +A + + V G VHVRIQQRNGR +LTT QGL EY KI + KE
Sbjct: 10 SAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKE 68
Query: 350 FAXNGTVXEHPEYGEXLQLQGDQRXNICQXLTKSGLV 460
F NGTV + PE G+ +QLQGDQR N+ L + +
Sbjct: 69 FCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 263 RNGRXTLTTXQGLSS-EYDLXKIXRACXKEFAXNGTVXEHPEYGEXLQLQGDQRXNICQX 439
RN R +T +GL L + K+FA +V + P E + +QGD +I +
Sbjct: 115 RNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 174
Query: 440 LTKSGLVKPE 469
+T + PE
Sbjct: 175 ITDTWPDVPE 184
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 176 LNTFXPFXDAIKSSEDDVQXGLVHVRIQQRNGRXTL--TTXQGLSS 307
LN+ PF D +KS++D ++ L H R + N + TT GL++
Sbjct: 975 LNSTKPFEDVVKSAQDSLRW-LCHKRFLEWNNETKIYSTTPLGLAA 1019
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,977,668
Number of Sequences: 37544
Number of extensions: 130387
Number of successful extensions: 211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -