Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j12
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-5|CAA19551.1|  247|Caenorhabditis elegans Hypothetical ...    29   1.0  
Z66523-3|CAA91412.1|  397|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z49966-2|CAA90242.1|  397|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AL023847-5|CAA19551.1|  247|Caenorhabditis elegans Hypothetical
           protein Y57A10C.9 protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 244 IM*CFFRLKRVVGWLNLRIGFFRLMR--GYLKTQLLHYNYIADSFNTFTPLYNFYLYIF 74
           I+ CF+R K++    NLR+  +  +   GY    L+H  Y+A  ++  +  YN Y  IF
Sbjct: 32  IIYCFWR-KKIPSPENLRLALYLAIGDLGYAVAALVHVGYLAIYWSNVSLDYNPYYIIF 89


>Z66523-3|CAA91412.1|  397|Caenorhabditis elegans Hypothetical
           protein M05D6.3 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 358 PSTFDNTID-IDIDSF*HLYCFSDSQLKM 275
           P+T+D  ++ +D++   HLYCF  S++++
Sbjct: 81  PNTYDKFLNNMDMNRIPHLYCFDHSRVEL 109


>Z49966-2|CAA90242.1|  397|Caenorhabditis elegans Hypothetical
           protein F35C11.2 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 358 PSTFDNTID-IDIDSF*HLYCFSDSQLKM 275
           P+T+D  ++ +D++   HLYCF  S++++
Sbjct: 81  PNTYDKFLNNMDMNRIPHLYCFDHSRVEL 109


>Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical
           protein C38C6.4 protein.
          Length = 359

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 151 QLLHYNYIADSFNTFTPLYNFYLYIFY 71
           Q ++  Y   +++     YN+YL++FY
Sbjct: 12  QTMYIKYFNKTYSIIEGSYNYYLFVFY 38


>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 113 HFYTIIQFLSLYFL*NYYMFFMPCL 39
           HF  II F S+YF  NY  F  P L
Sbjct: 108 HFLKIIFFFSIYF--NYTAFLFPLL 130


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 172 MRGYLKTQLLHYNYIADSFNTF 107
           ++ YLK QL HYN+I  S   F
Sbjct: 51  LKVYLKIQLFHYNFIILSIPMF 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,208,338
Number of Sequences: 27780
Number of extensions: 127387
Number of successful extensions: 244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)