Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30j10
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024214-6|AAF36074.1| 167|Caenorhabditis elegans Human jtb gen... 57 2e-08
AB016495-1|BAA34305.1| 133|Caenorhabditis elegans cJTB-like pro... 56 4e-08
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical... 28 6.4
AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical... 28 6.4
AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical ... 28 6.4
AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein. 28 6.4
AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein. 28 6.4
AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein. 28 6.4
Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical pr... 28 8.4
>AC024214-6|AAF36074.1| 167|Caenorhabditis elegans Human jtb gene
related protein 1 protein.
Length = 167
Score = 56.8 bits (131), Expect = 2e-08
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Frame = +1
Query: 154 IETCSXRXXXXXXXXXXXXXVIVLIVESRLAE-RLSSSHRMKNKTFPTENNST------- 309
+E CS + ++V +E E ++S MK + TE+ T
Sbjct: 1 MEYCSTKQISTFVLALIGFSILVFFIEEYTEESEMNSEMEMKKAFYKTEHGGTTGKLEKV 60
Query: 310 --------CWVYQPYKVISECHPCSDFEIRSKSIGVCIHTSFKEILKC-ENGETVTRSCD 462
CW ++P++V+++C PC DFEI++ G C+ T + + + C ++ TV R C
Sbjct: 61 VTEYPAEECWKHEPFEVVTQCAPCKDFEIKAIKAGHCLKTGYFDRVNCSKSSTTVLRPCP 120
Query: 463 RVAYLEKWAYWKFTIWSFVIGAASSIAVMLRMRVLNYRAKRRARQ 597
+ ++ F + + I S ++ R L R Q
Sbjct: 121 SPKQSRRHEFYLFYVVNAAILIVSFLSTTQRKAQLERAVYMRLPQ 165
>AB016495-1|BAA34305.1| 133|Caenorhabditis elegans cJTB-like
protein.
Length = 133
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +1
Query: 310 CWVYQPYKVISECHPCSDFEIRSKSIGVCIHTSFKEILKC-ENGETVTRSCDRVAYLEKW 486
CW ++P++V+++C PC DFEI++ G C+ T + + + C ++ TV R C +
Sbjct: 35 CWKHEPFEVVTQCAPCKDFEIKAIKAGHCLKTGYFDRVNCSKSSTTVLRPCPSPKQSRRH 94
Query: 487 AYWKFTIWSFVIGAASSIAVMLRMRVLNYRAKRRARQ 597
++ F + + I S ++ R L R Q
Sbjct: 95 EFYLFYVVNAAILIVSFLSTTQRKAQLERAVYMRLPQ 131
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 129 TVLSVVIANTRKNIIINLFSSQYHLFSLKEHKSGFH 22
T+ V NT+K+ + NLF S+ HL SL + H
Sbjct: 428 TIQCVSDMNTKKDALTNLFESERHLHSLPSDQQIVH 463
>AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical
protein Y39E4B.12c protein.
Length = 624
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 471 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 578
+F++ +L+V LV W CS+++ N+SSQ+ S
Sbjct: 3 IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39
>AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical
protein Y39E4B.12b protein.
Length = 623
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 471 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 578
+F++ +L+V LV W CS+++ N+SSQ+ S
Sbjct: 3 IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39
>AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical
protein Y39E4B.12a protein.
Length = 626
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 471 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 578
+F++ +L+V LV W CS+++ N+SSQ+ S
Sbjct: 3 IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39
>AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein.
Length = 624
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 471 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 578
+F++ +L+V LV W CS+++ N+SSQ+ S
Sbjct: 3 IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39
>AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein.
Length = 626
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 471 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 578
+F++ +L+V LV W CS+++ N+SSQ+ S
Sbjct: 3 IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39
>AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein.
Length = 623
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 471 LFREVGLLEVHNLVICHW-CSILYCCDAQNESSQLSS 578
+F++ +L+V LV W CS+++ N+SSQ+ S
Sbjct: 3 IFKKKAILKVLLLVPVFWICSLIFFAATSNDSSQIGS 39
>Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical
protein T07C5.1c protein.
Length = 523
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 262 SHRMKNKTFPTENNSTCWVYQPYKVISECHPCSDFEIRSKSIGVCIH 402
SH MKNK F +E T W+ K + H F++ S ++ + H
Sbjct: 451 SHLMKNKPFTSEERVTKWIDFVLKYETSEH----FDLESNNLSIIEH 493
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,303,082
Number of Sequences: 27780
Number of extensions: 302566
Number of successful extensions: 707
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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