Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j09
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    29   0.74 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    28   1.7  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    27   2.3  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    27   3.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.9  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   3.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   6.9  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   6.9  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   9.1  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 222 RVHEELQRSTCIRSGV--IDEDSAAIVRAKSCLAASRQE 332
           RVHE L+R +CIRS V  +D++     R +  L  S +E
Sbjct: 224 RVHESLKRISCIRSKVEELDQEITETARLQDELFKSTEE 262


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 60  LDYIELLFERCSLHDVVDIPPALFKHKH 143
           LD    +FE C L+D++D      KHK+
Sbjct: 418 LDAANAIFESCGLNDIMDETLEFLKHKN 445


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 315 AASRQETVARKA--ARDLFASLSNGEQYITTVQLERRIRE 428
           AA+ Q+ + + A   +D  A L  GEQY   VQL++ + E
Sbjct: 417 AANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAE 456


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 155 KIINMFVFEQCWRYVHYIVQ*TSLKQQLNIIELFVCLFLSYARYSK 18
           ++++    EQ  + +H +   TS K +LN+ E F  L  +  RY+K
Sbjct: 129 RVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNK 174


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 462  RPLSSVTSYCKSLLSDVRVEPLLCIVHHSTNWQ 364
            + L+S+  +   L+SD+ V+P L +   S N Q
Sbjct: 1565 KALNSMQEFTSQLISDINVDPALFVQSTSVNTQ 1597


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 336 VARKAARDLFASLSNGEQY 392
           V RK+ RDL  SLSNG  Y
Sbjct: 708 VERKSIRDLIQSLSNGRLY 726


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 579  FHYCLCDRQLVGQMVLMLVRHRLAHLPLLSYRRQENR 469
            FHYC C +   G M+   + H   H   +   +++ R
Sbjct: 1171 FHYCFCRQPEAGMMIECELCHEWYHAKCMKMSKKKLR 1207


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 354 RDLFASLSNGEQ-YITTVQLERRIREICN 437
           +D+   L+  E  Y TT++LE+R +EI N
Sbjct: 458 KDIAIRLNTAEYIYRTTIELEKRFQEISN 486


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/60 (20%), Positives = 29/60 (48%)
 Frame = -1

Query: 549 VGQMVLMLVRHRLAHLPLLSYRRQENRCLRPLSSVTSYCKSLLSDVRVEPLLCIVHHSTN 370
           +GQ++ +  +  +  +   +Y    + C+     +  YC +LL D+  +  L ++H S +
Sbjct: 690 LGQIIGICAKDEVPEVRQSAYALLGDMCMYCFDQIRPYCDALLVDMLPQMQLPLLHVSAS 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,150
Number of Sequences: 5004
Number of extensions: 57331
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)