Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30j08
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical pr... 89 4e-18
Z67995-3|CAI79213.1| 150|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z81577-1|CAB04651.3| 289|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 29 2.6
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81502-2|CAB04106.2| 720|Caenorhabditis elegans Hypothetical pr... 28 5.9
U80839-17|AAB37921.1| 372|Caenorhabditis elegans Serpentine rec... 28 7.9
>U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical
protein T03G11.3 protein.
Length = 349
Score = 88.6 bits (210), Expect = 4e-18
Identities = 47/135 (34%), Positives = 68/135 (50%)
Frame = +1
Query: 280 CGVCGRHFASDRIAKHQEICKKAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTT 459
C +C R F + KH+ C+K S RKPFD K R +G++ ++K +
Sbjct: 23 CPICDRRFIKSSLEKHESACRKLASLHRKPFDSGKQRASGSDLT--YADIKKVQHEKNKN 80
Query: 460 KVNKGKQLNSNWRQKHEEFIQAIRAAKQVQAHLNAGGKLSDLXXXXXSENPDYVQCPHCN 639
+ +NWR++H FI A+ ++K+V L G L + DYVQC +C+
Sbjct: 81 G-GVFPRPQTNWRERHGNFIDAVSSSKRVDYALKTGAPLPP--PPKTAVPSDYVQCEYCS 137
Query: 640 RRFNQGAAERHIPKC 684
R FN AAERHIP C
Sbjct: 138 RNFNAAAAERHIPFC 152
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 625 CPHCNRRFNQGAAERHIPKCANFQ--FNKPKPAAKRR 729
CP C+RRF + + E+H C KP + K+R
Sbjct: 23 CPICDRRFIKSSLEKHESACRKLASLHRKPFDSGKQR 59
>Z67995-3|CAI79213.1| 150|Caenorhabditis elegans Hypothetical
protein M153.4 protein.
Length = 150
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 280 CGVCGRHFASDRIAKHQEIC-KKAHSKKRKPFDVLKHRLAGTEAEPFI 420
C +CGR F S IA H+ C KK H++ K K R A + E I
Sbjct: 39 CFICGRQFGSKSIAIHEPQCLKKWHAENEK-LPKSKRRAAPVKPEAVI 85
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +1
Query: 478 QLNSNWRQKHEEFIQAIRAAKQV--QAHLNAGGKL-SDLXXXXXSENPD--YVQCPHCNR 642
Q W ++E+ ++ R A V +A + G+L ++ +N V+C HC R
Sbjct: 57 QCLKKWHAENEKLPKSKRRAAPVKPEAVIGDDGRLDAEATNEVLWKNAQGLMVECEHCGR 116
Query: 643 RFNQGAAERHIPKC 684
+FN+ H C
Sbjct: 117 KFNEDRLSVHQRSC 130
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 280 CGVCGRHFASDRIAKHQEIC 339
C CGR F DR++ HQ C
Sbjct: 111 CEHCGRKFNEDRLSVHQRSC 130
>Z81577-1|CAB04651.3| 289|Caenorhabditis elegans Hypothetical
protein R11.1 protein.
Length = 289
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 367 PFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNKG 474
PFDV K R+ G + +PF K T T S +G
Sbjct: 217 PFDVAKSRIQGPQPDPFTRKYSGTMQTISLVYKEEG 252
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 622 QCPHCNRRF-NQGAAERHIPKCANFQFNKPKPAA 720
QCP+CNR N +RH C + Q P+ AA
Sbjct: 318 QCPNCNRNLANARNLQRHRQTCGSAQHAAPQLAA 351
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical
protein F58G4.1 protein.
Length = 1974
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 388 RLAGTEAEPFINKLRKTTATPSTTKVNKGKQLNS-NW 495
+L E+E FIN L K T VNKG+ L+ NW
Sbjct: 384 KLYCVESEKFINALLKPRVKVGTEWVNKGQNLDQVNW 420
>Z81502-2|CAB04106.2| 720|Caenorhabditis elegans Hypothetical
protein F14B6.2 protein.
Length = 720
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 298 HFASDRIAKHQEICKKAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPST--TKVNK 471
HF + K E K+ +K+K LK TEAE +N T+ P T ++ K
Sbjct: 251 HFDLLKELKKDEEEKEKKKEKKKKGKGLKKAKKLTEAEKLLNNSTSTSVIPDTAVSRKPK 310
Query: 472 GKQLNSN 492
GK L +
Sbjct: 311 GKGLKKS 317
>U80839-17|AAB37921.1| 372|Caenorhabditis elegans Serpentine
receptor, class w protein97 protein.
Length = 372
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 437 VLRNLLIKGSASVPAKRCLSTSKGFLFLLWAFL 339
++R ++IK A++ +C GFL + W FL
Sbjct: 138 LIRYVIIKFGATMKFDKCSKPRFGFLVIFWCFL 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,640,400
Number of Sequences: 27780
Number of extensions: 273075
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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