Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j07
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802...    30   1.5  
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    30   1.5  
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911...    29   4.6  
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770...    28   6.1  
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    28   8.1  

>11_02_0073 -
           8020401-8020512,8020594-8020679,8020761-8020921,
           8021196-8021400,8021664-8021697,8022352-8022422,
           8023363-8023542,8023625-8023765,8023859-8023975,
           8024074-8024469
          Length = 500

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 18  SFFKAIYFVKYLSTICFVF-----LFYFYKMKTVKTQSMRSVRSAKSLKSIKSAHDD 173
           S +K  YF   L + C V+      FYFY +KT+  +++    S + +K I   H +
Sbjct: 284 SEWKEAYFFLKLDSSCLVWSQSHSYFYFYMVKTIYVKNLPENASKEKIKEIFEKHGE 340


>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 147 KSIKSAHDDSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGN-DSKRKN 323
           KS    H    DP  +E  +Y + +   F+       RK F N    KSSKGN D   KN
Sbjct: 286 KSSSRTHSTLTDPNFVE--NYFKYSRLHFIGTWRNRYRKRFSNLLGDKSSKGNRDHSGKN 343

Query: 324 NATL 335
           N  +
Sbjct: 344 NTII 347


>05_03_0168 -
           9116648-9117775,9118699-9118885,9119724-9119821,
           9119948-9120114,9122242-9122578
          Length = 638

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 132 SAKSLKSIKSAHDDSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGND 308
           S+++++ +KS H     P+ M       +A    LCPC  +  +S         SK +D
Sbjct: 423 SSQAMQDLKSGHMTLTSPRAMVTGQIFGVAVGSILCPCVFLAFQSTTKPNAPVGSKQSD 481


>05_03_0561 -
           15476484-15476649,15476814-15476893,15476971-15477030,
           15477117-15477210,15477287-15477421,15477601-15477656,
           15478359-15478460,15478544-15478651,15479206-15479283,
           15479432-15479521,15480061-15480123
          Length = 343

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 629 RGKWYHFSQFMNCVNVCFAISDIDSIEF 546
           R KW H  + +N V  C AIS+ D + F
Sbjct: 190 RRKWIHLFEGVNAVIFCAAISEYDQMLF 217


>02_04_0206 +
           20916063-20919669,20919816-20920014,20920935-20921074,
           20921184-20921263,20922759-20922875,20923089-20923136,
           20923509-20923601,20923881-20923958,20924114-20924218,
           20924543-20925212,20925253-20925350,20925887-20925963,
           20926035-20926117,20926208-20926287,20927060-20927139,
           20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 5/149 (3%)
 Frame = +3

Query: 93  MKTVKTQSMRS-VRSAKSLKSIKSAHDDSVDPKVMEFKDYIEMATKQFLCPCPVVVRKS- 266
           M+ V   S R  V S +S +S+K +H D      +E K   E      + PC  +V  S 
Sbjct: 443 MEKVSHGSQRGGVLSCES-RSLKESHADENQSSTLEVKTCEEGLQTGQVEPCHSIVALSD 501

Query: 267 ---FQNDYFYKSSKGNDSKRKNNATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIE 437
              +  D   +   G  S    N  L K+D        +SC  D  S  S  Y   I + 
Sbjct: 502 SGKYGTDILPRGGDGLRSMTGANHELVKDDFHPKSDVVVSCPVDEASIPS-NYNSPIDV- 559

Query: 438 SIYDNMNNLVEIVINKVSNVPRILMQLIG 524
            +Y     + EI  N++  V ++   L+G
Sbjct: 560 LLYKEDGLVGEISENRI-GVEKLAHDLLG 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,742
Number of Sequences: 37544
Number of extensions: 253205
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)