Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30j07
(692 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87685-1|BAA13438.2| 2044|Homo sapiens KIAA0244 protein. 31 5.2
BC113652-1|AAI13653.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 5.2
BC113650-1|AAI13651.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 5.2
AL445676-1|CAI16104.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 5.2
AL050329-1|CAM45842.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 5.2
AF091622-1|AAF21292.1| 2039|Homo sapiens PHD finger protein 3 pr... 31 5.2
M73077-1|AAA58618.1| 835|Homo sapiens glucocorticoid receptor r... 30 9.0
D87448-1|BAA13389.1| 1550|Homo sapiens KIAA0259 protein. 30 9.0
BC151237-1|AAI51238.1| 1435|Homo sapiens topoisomerase (DNA) II ... 30 9.0
BC126209-1|AAI26210.2| 1435|Homo sapiens topoisomerase (DNA) II ... 30 9.0
AF159851-1|AAF80386.1| 1514|Homo sapiens Rho GAP p190-A protein. 30 9.0
AB019397-1|BAA34202.1| 1435|Homo sapiens DNA topoisomerase II bi... 30 9.0
>D87685-1|BAA13438.2| 2044|Homo sapiens KIAA0244 protein.
Length = 2044
Score = 30.7 bits (66), Expect = 5.2
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 150 SIKSAHD--DSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGNDSKRKN 323
S K H+ DS+ K E +AT++ V+ S ++D+ + + +D
Sbjct: 294 SDKEEHEQNDSISGKTGETVVEEMIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDA 353
Query: 324 NATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIYDN 452
T P + +L L C D ++ ++E KDT+ I +N
Sbjct: 354 ACTNPNKTENSLV--GLPSCVDEVTECNLELKDTMGIADKTEN 394
>BC113652-1|AAI13653.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 5.2
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 150 SIKSAHD--DSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGNDSKRKN 323
S K H+ DS+ K E +AT++ V+ S ++D+ + + +D
Sbjct: 289 SDKEEHEQNDSISGKTGETVVEEMIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDA 348
Query: 324 NATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIYDN 452
T P + +L L C D ++ ++E KDT+ I +N
Sbjct: 349 ACTNPNKTENSLV--GLPSCVDEVTECNLELKDTMGIADKTEN 389
>BC113650-1|AAI13651.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 5.2
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 150 SIKSAHD--DSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGNDSKRKN 323
S K H+ DS+ K E +AT++ V+ S ++D+ + + +D
Sbjct: 289 SDKEEHEQNDSISGKTGETVVEEMIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDA 348
Query: 324 NATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIYDN 452
T P + +L L C D ++ ++E KDT+ I +N
Sbjct: 349 ACTNPNKTENSLV--GLPSCVDEVTECNLELKDTMGIADKTEN 389
>AL445676-1|CAI16104.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 5.2
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 150 SIKSAHD--DSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGNDSKRKN 323
S K H+ DS+ K E +AT++ V+ S ++D+ + + +D
Sbjct: 289 SDKEEHEQNDSISGKTGETVVEEMIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDA 348
Query: 324 NATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIYDN 452
T P + +L L C D ++ ++E KDT+ I +N
Sbjct: 349 ACTNPNKTENSLV--GLPSCVDEVTECNLELKDTMGIADKTEN 389
>AL050329-1|CAM45842.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 5.2
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 150 SIKSAHD--DSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGNDSKRKN 323
S K H+ DS+ K E +AT++ V+ S ++D+ + + +D
Sbjct: 289 SDKEEHEQNDSISGKTGETVVEEMIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDA 348
Query: 324 NATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIYDN 452
T P + +L L C D ++ ++E KDT+ I +N
Sbjct: 349 ACTNPNKTENSLV--GLPSCVDEVTECNLELKDTMGIADKTEN 389
>AF091622-1|AAF21292.1| 2039|Homo sapiens PHD finger protein 3
protein.
Length = 2039
Score = 30.7 bits (66), Expect = 5.2
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 150 SIKSAHD--DSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGNDSKRKN 323
S K H+ DS+ K E +AT++ V+ S ++D+ + + +D
Sbjct: 289 SDKEEHEQNDSISGKTGETVVEEMIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDA 348
Query: 324 NATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIYDN 452
T P + +L L C D ++ ++E KDT+ I +N
Sbjct: 349 ACTNPNKTENSLV--GLPSCVDEVTECNLELKDTMGIADKTEN 389
>M73077-1|AAA58618.1| 835|Homo sapiens glucocorticoid receptor
repression factor 1 protein.
Length = 835
Score = 29.9 bits (64), Expect = 9.0
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 147 KSIKSAHDDSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGNDSKRKNN 326
K+I + SVD +++ ++ TK+ CP V ++ + + +D +KN+
Sbjct: 144 KAIYKSSKQSVDALILKHIHFVYHPTKETCPSCPACVDAKIEHLISSRFIRPSDRNQKNS 203
Query: 327 ATLPKEDAQNL 359
+ P D NL
Sbjct: 204 LSDPNIDRINL 214
>D87448-1|BAA13389.1| 1550|Homo sapiens KIAA0259 protein.
Length = 1550
Score = 29.9 bits (64), Expect = 9.0
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 VRKSF-QNDYFYKSSKGNDSKRKNNATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIV 431
+ K F Q++ YK+ ++K N++ P +D LS D ++ ++I + V
Sbjct: 299 IEKGFCQDESIYKTEPRPEAKTMPNSSTPTSQINTIDSRTLS---DVSNISNINA--SCV 353
Query: 432 IESIYDNMNNLVEIVINKVSNV 497
ESI +++N+ +E + + N+
Sbjct: 354 SESICNSLNSKLEPTLENLENL 375
>BC151237-1|AAI51238.1| 1435|Homo sapiens topoisomerase (DNA) II
binding protein 1 protein.
Length = 1435
Score = 29.9 bits (64), Expect = 9.0
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 VRKSF-QNDYFYKSSKGNDSKRKNNATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIV 431
+ K F Q++ YK+ ++K N++ P +D LS D ++ ++I + V
Sbjct: 184 IEKGFCQDESIYKTEPRPEAKTMPNSSTPTSQINTIDSRTLS---DVSNISNINA--SCV 238
Query: 432 IESIYDNMNNLVEIVINKVSNV 497
ESI +++N+ +E + + N+
Sbjct: 239 SESICNSLNSKLEPTLENLENL 260
>BC126209-1|AAI26210.2| 1435|Homo sapiens topoisomerase (DNA) II
binding protein 1 protein.
Length = 1435
Score = 29.9 bits (64), Expect = 9.0
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 VRKSF-QNDYFYKSSKGNDSKRKNNATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIV 431
+ K F Q++ YK+ ++K N++ P +D LS D ++ ++I + V
Sbjct: 184 IEKGFCQDESIYKTEPRPEAKTMPNSSTPTSQINTIDSRTLS---DVSNISNINA--SCV 238
Query: 432 IESIYDNMNNLVEIVINKVSNV 497
ESI +++N+ +E + + N+
Sbjct: 239 SESICNSLNSKLEPTLENLENL 260
>AF159851-1|AAF80386.1| 1514|Homo sapiens Rho GAP p190-A protein.
Length = 1514
Score = 29.9 bits (64), Expect = 9.0
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 147 KSIKSAHDDSVDPKVMEFKDYIEMATKQFLCPCPVVVRKSFQNDYFYKSSKGNDSKRKNN 326
K+I + SVD +++ ++ TK+ CP V ++ + + +D +KN+
Sbjct: 531 KAIYKSSKQSVDALILKHIHFVYHPTKETCPSCPACVDAKIEHLISSRFIRPSDRNQKNS 590
Query: 327 ATLPKEDAQNL 359
+ P D NL
Sbjct: 591 LSDPNIDRINL 601
>AB019397-1|BAA34202.1| 1435|Homo sapiens DNA topoisomerase II
binding protein protein.
Length = 1435
Score = 29.9 bits (64), Expect = 9.0
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 VRKSF-QNDYFYKSSKGNDSKRKNNATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIV 431
+ K F Q++ YK+ ++K N++ P +D LS D ++ ++I + V
Sbjct: 184 IEKGFCQDESIYKTEPRPEAKTMPNSSTPTSQINTIDSRTLS---DVSNISNINA--SCV 238
Query: 432 IESIYDNMNNLVEIVINKVSNV 497
ESI +++N+ +E + + N+
Sbjct: 239 SESICNSLNSKLEPTLENLENL 260
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,729,812
Number of Sequences: 237096
Number of extensions: 1456553
Number of successful extensions: 3605
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3603
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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