Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j07
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83109-10|CAB05520.2|  435|Caenorhabditis elegans Hypothetical p...    34   0.084
DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.      31   0.78 
AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical ...    31   0.78 
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like ...    29   4.2  
Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    28   7.3  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    28   7.3  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    28   7.3  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U97006-3|AAC47966.1|  470|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      27   9.6  

>Z83109-10|CAB05520.2|  435|Caenorhabditis elegans Hypothetical
           protein F44G3.8 protein.
          Length = 435

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 20/89 (22%), Positives = 42/89 (47%)
 Frame = +3

Query: 420 DTIVIESIYDNMNNLVEIVINKVSNVPRILMQLIGLMVPYFRKLNRINIRNCKTNVYTIH 599
           D + +  I++      +I  +++ N  ++L      ++  F+ +  INI  C     T  
Sbjct: 66  DLVRVIKIFEKKLKTFQIYFSRLDN--QVLNAYFEALLNNFKIIGPINIETCYFGSLTPS 123

Query: 600 ELRKMIPFSTITDVCLNGSTLSEINYATL 686
           EL +++PF  +T++ L  S  S  + A +
Sbjct: 124 ELSRVLPFLEVTNIHLQTSNPSYFSIANI 152


>DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.
          Length = 690

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 617 YHFSQFMNCVNVCFAISDIDSIEFSKIR 534
           YHFS   NC N+  +I D  S +F  IR
Sbjct: 217 YHFSDIYNCTNLISSIEDFASSQFRCIR 244


>AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical
           protein W02G9.2 protein.
          Length = 690

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 617 YHFSQFMNCVNVCFAISDIDSIEFSKIR 534
           YHFS   NC N+  +I D  S +F  IR
Sbjct: 217 YHFSDIYNCTNLISSIEDFASSQFRCIR 244


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/90 (24%), Positives = 38/90 (42%)
 Frame = +3

Query: 267 FQNDYFYKSSKGNDSKRKNNATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIY 446
           FQ+   Y SSKG+   R +   LP         N        +  A I  + ++   S+ 
Sbjct: 701 FQSALLYTSSKGDRRIRVHTMCLPTTGDLLQLYNNFDLKATVSYLAKIGVERSMTGSSLA 760

Query: 447 DNMNNLVEIVINKVSNVPRILMQLIGLMVP 536
           D+   LV  V++ V    + + +  G++VP
Sbjct: 761 DSREALVNAVVDSVGAYQKAVSRGSGMLVP 790


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +3

Query: 105 KTQSMRSVRSAKSLKSIKSAHDDSVDPK---VMEFKDYIEMATKQ 230
           KT+++ ++R A   K+IK+    + DPK   + EF++ IEM  +Q
Sbjct: 313 KTETLGTLRYANRAKNIKNQPKINEDPKDALLREFQEEIEMLREQ 357


>AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like
           protein (klp-11) protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +3

Query: 105 KTQSMRSVRSAKSLKSIKSAHDDSVDPK---VMEFKDYIEMATKQ 230
           KT+++ ++R A   K+IK+    + DPK   + EF++ IEM  +Q
Sbjct: 276 KTETLGTLRYANRAKNIKNQPKINEDPKDALLREFQEEIEMLREQ 320


>Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical
           protein F18E2.4 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 408 WMLAMLHLCNNSMHSCPNFVHLLL 337
           W++A+  LC + +H CP  ++L +
Sbjct: 272 WVIAIAELCWSIVHGCPAIIYLTM 295


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 652 PF-RQTSVIVENGIIFLNS*IV*TFVLQFLILILLSFRKY 536
           PF R+T  IVE G++ L + +V   V+  + ++L+ F KY
Sbjct: 86  PFVRETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKY 125


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 652 PF-RQTSVIVENGIIFLNS*IV*TFVLQFLILILLSFRKY 536
           PF R+T  IVE G++ L + +V   V+  + ++L+ F KY
Sbjct: 86  PFVRETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKY 125


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 652 PF-RQTSVIVENGIIFLNS*IV*TFVLQFLILILLSFRKY 536
           PF R+T  IVE G++ L + +V   V+  + ++L+ F KY
Sbjct: 86  PFVRETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKY 125


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 257  YYNRARTKKLFCRHFYVIFELHHFRVNRV 171
            YYN+   K+L+ ++ Y +++LH    N++
Sbjct: 1217 YYNQYSHKELYVKYIYKLYDLHTSYGNKI 1245


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 257  YYNRARTKKLFCRHFYVIFELHHFRVNRV 171
            YYN+   K+L+ ++ Y +++LH    N++
Sbjct: 1217 YYNQYSHKELYVKYIYKLYDLHTSYGNKI 1245


>U97006-3|AAC47966.1|  470|Caenorhabditis elegans Hypothetical
           protein C13F10.6 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 414 YKDTIVIESIYDN--MNNLVEIVINKVSNVPRILMQLIGLMVPYFRKLNRINIRNCKTNV 587
           YKDTI    ++ N     L+  ++       R  +Q++   +  F KLNRI +RN +   
Sbjct: 84  YKDTIQNPDVFFNGVSKRLLNRIVEFEIRCRRFTVQILD-NIEKFPKLNRIIVRNARNFS 142

Query: 588 YTIHE 602
           + + E
Sbjct: 143 FELDE 147


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 276 DYFYKSSKGNDSKRKNNATLPKEDAQNLDMNALSCCTDATSQAS 407
           D+  KS   ++S   NN+TL  EDA +   + +S       ++S
Sbjct: 468 DFMKKSQNTSNSDSINNSTLSSEDADDSSTDLISSVVSVPPESS 511


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 257  YYNRARTKKLFCRHFYVIFELHHFRVNRV 171
            YYN+   K+L+ ++ Y +++LH    N++
Sbjct: 1217 YYNQYSHKELYVKYIYKLYDLHTSYGNKI 1245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,228,331
Number of Sequences: 27780
Number of extensions: 280959
Number of successful extensions: 1008
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)