Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j04
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    30   0.26 
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    30   0.26 
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 434 FPVHRAILSACSPYFLALFTTTLHSREQSDVLISGVRSXXXXXXXEYAYLRRIDVTDTNV 613
           +PVHRAI+  C  +   L    L S ++  VL     S       ++ Y  + D+     
Sbjct: 317 YPVHRAIMCRCEYFLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLYTDKTDIAPELA 376

Query: 614 HXLLMTADYLA 646
             ++  AD L+
Sbjct: 377 LDVVYVADMLS 387


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 351 WQRCRRSIDCASVVCYATLLCALTMALPSPCTVLYSQPA 467
           W+     I    +      +C+ +M  P PC VLY+ P+
Sbjct: 43  WEESNTGIPLEDITNTVFYICSGSMDAPQPCAVLYTSPS 81


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 375 DCASVVCYATLLCALTMALPSPCTVLYSQP--AAHTSWHCSQQLFIL 509
           DCA  + +  +  A   ++P PC +    P     TS+   Q L+I+
Sbjct: 253 DCALTLSFICIFLAQYTSIPLPCPLQLPSPDQKPMTSFSSEQMLYIM 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,092
Number of Sequences: 5004
Number of extensions: 38956
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)