Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30j02
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 30 0.25
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 28 1.00
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 28 1.3
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|... 28 1.3
SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|... 28 1.3
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.3
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 3.0
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 26 4.0
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 26 5.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 5.3
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 7.0
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 25 7.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.3
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 9.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.3
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 30.3 bits (65), Expect = 0.25
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +2
Query: 92 DNSIHSVVHRSAGSDT---VSSYERHNDEKPKSISFIQRLPADRAEIT*RSLVNTNVYES 262
D SIH + S+ V + H + KP+ ++ Q LP D + +S++N S
Sbjct: 99 DMSIHRALFASSALQARQLVLHGKVHVNGKPERRAYRQLLPGDLVTVDQKSVMNCVSASS 158
Query: 263 TENFHFNGDEPTEKVSNKTNKN 328
+ TE+VS+K +N
Sbjct: 159 NNTPSIQDGKQTEQVSSKDGEN 180
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 28.3 bits (60), Expect = 1.00
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 170 KPKSISFIQRLPADRAEIT*RSLVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESV 349
KPK+ SF++ P+ A N + ++S ++FH P E VS++ ++ + SV
Sbjct: 232 KPKN-SFVKTSPSPLANGPSFRSANASPFDSCDSFHSGSSIPIEPVSSR-QSSVVNNNSV 289
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 302 KVSNKTNKNITQHESVSNANRRAIA 376
++S TN NIT ES SN+N + I+
Sbjct: 288 EISQNTNANITVEESDSNSNEKFIS 312
>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 166
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 398 FNDRDDINEPNIEFGKNEIIGSVINDNIPGFIEASAAKAD 517
F+D NE N E N + NIP ++ AS + D
Sbjct: 31 FSDNRKFNERNSEASSNVGFQRRVRSNIPSYLSASVEEGD 70
>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 302 KVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRD 412
K S + N TQ ++ +N N + E+E N P+ DRD
Sbjct: 107 KKSRSKSANGTQKKNANN-NEEQLDEEEQNDPYLDRD 142
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 245 TNVYESTENFHFNGDEPTEKVSNKTNKN 328
+ +Y + +F + D T VSN TNK+
Sbjct: 334 SQMYSAASHFRYRSDPSTRHVSNSTNKS 361
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 290 EPTEKVSNKTNKNITQHESVSNANRRAIAE 379
EP EKV+ I HES+ N +AE
Sbjct: 14 EPFEKVNENYKHEIDYHESILNKKTAVLAE 43
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 416 INEPNIEFGKNEIIGSVINDNIPGFIEASA 505
I EP++ EI ++++N+P FI++ A
Sbjct: 234 IFEPSLSERITEITDQILSENVPSFIDSMA 263
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 339 CCVMFLLVLLETFSVGSSPLKWKF 268
C V+F +V L ++ SSP KW +
Sbjct: 133 CYVLFAIVCLLAAALTSSPYKWAY 156
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +2
Query: 239 VNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRD-D 415
+ TN +S+ N + P + NK V N N EDE NV N+ + D
Sbjct: 52 ITTNEKQSSPVDSHN-ESPNDTTINKGEDG--NENEVDNVNNNDKKEDEDNVEENEEEAD 108
Query: 416 INEPNIE 436
NE E
Sbjct: 109 ANEEEEE 115
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +2
Query: 239 VNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRR 367
+N+N + EN HF D+ + N +N+ + + + + R
Sbjct: 110 INSNSNKGKENMHFVLDDNGDSKGNASNQQVERDDKLDMETTR 152
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 150 TNGTMTKNLKVLVSSNDYPPTALKLLEDHW*IQMFTNQQRTSISMATSQRRKFPI 314
T G++TK ++ P A++ H+ + F+N TS+S R F +
Sbjct: 340 TRGSITKQPVACLNGFKKPVIAVRFSPIHYELNSFSNFSFTSVSFNLPYRMVFAV 394
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.3
Identities = 19/95 (20%), Positives = 41/95 (43%)
Frame = +2
Query: 251 VYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPN 430
+YES + ++++ KT + + +S + + + S +PF + E
Sbjct: 6 LYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGK--VVQLRSFIPFKNAAHALE-- 61
Query: 431 IEFGKNEIIGSVINDNIPGFIEASAAKADEESNAA 535
N+I V+ND + F+E + KA ++ +
Sbjct: 62 ---NANDISEGVLNDFLKNFLELNLPKASKKKKVS 93
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 TSQRRK-FPIKLTRTSHNTSPYRTLIDGLLRRTNQTYHSM 404
TSQ K F K + PYR DG RTNQT +
Sbjct: 1056 TSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,651
Number of Sequences: 5004
Number of extensions: 49577
Number of successful extensions: 193
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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