Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30j02
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 35 0.057
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 35 0.057
U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical pr... 31 0.53
U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein. 31 0.93
AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormo... 31 0.93
U64846-2|AAG24112.1| 332|Caenorhabditis elegans Serpentine rece... 30 1.2
AF040650-5|AAB95008.1| 325|Caenorhabditis elegans Hypothetical ... 30 1.6
U64858-9|AAB18288.2| 398|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm rece... 29 2.8
Z82282-9|CAB05281.2| 361|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr... 28 6.5
U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF016418-10|AAK18896.1| 611|Caenorhabditis elegans Hypothetical... 28 6.5
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 34.7 bits (76), Expect = 0.057
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Frame = +2
Query: 83 PSDDNSIHSVVHRSAGSDTVS---------SYERHNDEKPKSISFIQRLPADRAEIT*RS 235
P+ + + + R +G+DT+S + ++++ ++ +Q+ ++ EI+ +
Sbjct: 76 PNATSPLSQISDRDSGNDTISPPLTSQNSATTPNYHNQPQMQLTPLQQAKPEKEEISPYA 135
Query: 236 LVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 397
+ N+ ST++ NG+E +K ++ +N S S R D +N P
Sbjct: 136 I--NNILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 187
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 34.7 bits (76), Expect = 0.057
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Frame = +2
Query: 83 PSDDNSIHSVVHRSAGSDTVS---------SYERHNDEKPKSISFIQRLPADRAEIT*RS 235
P+ + + + R +G+DT+S + ++++ ++ +Q+ ++ EI+ +
Sbjct: 72 PNATSPLSQISDRDSGNDTISPPLTSQNSATTPNYHNQPQMQLTPLQQAKPEKEEISPYA 131
Query: 236 LVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP 397
+ N+ ST++ NG+E +K ++ +N S S R D +N P
Sbjct: 132 I--NNILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRGTPYDRTNTP 183
>U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical
protein T08H4.3 protein.
Length = 377
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/99 (23%), Positives = 39/99 (39%)
Frame = +2
Query: 230 RSLVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDR 409
R L N N + +EN HF G + S+ N ++ +S RR + SN N
Sbjct: 74 RMLYNDNTMQKSENDHFTGMNLSTSASSSGNSTSSKDQS-----RRQFYTESSNSSGNGA 128
Query: 410 DDINEPNIEFGKNEIIGSVINDNIPGFIEASAAKADEES 526
+ N E V N ++ F +K+++ +
Sbjct: 129 AATSGSNGSSSSTESKSDVFNISMNAFAATPGSKSEDHN 167
>U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein.
Length = 359
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 191 IQRLPADRAEIT*RSLVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRA 370
+Q+ ++ EI+ ++ N+ ST++ NG+E +K ++ +N S S R
Sbjct: 6 LQQAKPEKEEISPYAI--NNILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRG 63
Query: 371 IAEDESNVP 397
D +N P
Sbjct: 64 TPYDRTNTP 72
>AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 2 protein.
Length = 359
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 191 IQRLPADRAEIT*RSLVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRRA 370
+Q+ ++ EI+ ++ N+ ST++ NG+E +K ++ +N S S R
Sbjct: 6 LQQAKPEKEEISPYAI--NNILSSTQSSPDNGNEADDKENSSVRRNTFPASSASTKKPRG 63
Query: 371 IAEDESNVP 397
D +N P
Sbjct: 64 TPYDRTNTP 72
>U64846-2|AAG24112.1| 332|Caenorhabditis elegans Serpentine
receptor, class t protein35 protein.
Length = 332
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 364 SISVRYGLVLCDVLVSFIGNFLRWLVAIEMEVLC*FVNI 248
S + + L + DVLV FI + L ++AI+ V C + N+
Sbjct: 69 SFKIMFHLAVTDVLVIFINSILTGILAIQGAVYCTYPNL 107
>AF040650-5|AAB95008.1| 325|Caenorhabditis elegans Hypothetical
protein T04B8.2 protein.
Length = 325
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +2
Query: 236 LVNTNVYESTENFHF---NGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFND 406
++ N Y +TE+ F N D E ++ K + + + N R +D S++ +
Sbjct: 146 ILGDNSYITTEDMEFILKNFDLKYEFLTRCLQKTMIDFKLLVNLPRLEFWKD-SDLTLDH 204
Query: 407 RDDINEPNIEFGKNEIIGSVINDNIPGFIEASAAK 511
+N I FGKN I+ +ND I ++ + +K
Sbjct: 205 LKMMNCKTIRFGKNAIVPKQLNDYIFHWLAGNLSK 239
>U64858-9|AAB18288.2| 398|Caenorhabditis elegans Hypothetical
protein C16D9.1 protein.
Length = 398
Score = 29.1 bits (62), Expect = 2.8
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 9/173 (5%)
Frame = +2
Query: 92 DNSIHSVVHRSAGSDTVSSYERHNDEKPKSISFIQRLPADRAEIT*RSLVNTNVYESTEN 271
D S SVV +++ SS N E +S ++ L ++ ++ S+++++ + +
Sbjct: 196 DKSDKSVVVKTSDIFKGSSKFSEN-ESSRSDGELEPLKTEKTTLS--SILSSSTHMDIQL 252
Query: 272 FHFNGDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP--FNDRDDINEPNIEFGK 445
+ G P++ VSN+ +++ + + + P ++ + +N P E+G+
Sbjct: 253 SGYEG--PSDSVSNQNREDLLTTKPTTTTTTTTTTTQKPIAPKVIDNYNVVNTPKTEYGR 310
Query: 446 ---NEIIGSVINDNIP-GFIEA-SAAKADEESNAADAG--CHKCLEKGKVCMS 583
+ + S + P G +EA KA D C KCL K K C S
Sbjct: 311 RLRDTRVKSCFREIRPMGKMEALRVVKAYSLEQCTDMCRLCTKCLVKQKKCQS 363
>AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm
receptor protein 66 protein.
Length = 331
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 30 TANTYLSMLIYKKVLCRFPAMITRFTQLYIGLLVAIPCLATNGTMTKNLKVLVSSNDY 203
T +++S+L + LC F + TRF + + G L + L +K L + NDY
Sbjct: 100 TTFSFISVLFIYRYLCLFDSSKTRFFEGFKGGLWMLYPLLPGICYASTIKYLCAPNDY 157
>Z82282-9|CAB05281.2| 361|Caenorhabditis elegans Hypothetical
protein T07G12.12 protein.
Length = 361
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 290 EPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEII-GSV 466
EP E++++ N + + + ++ +N+ D DDIN P + G++E + V
Sbjct: 103 EPEEELNSSHESNNSVEKVMDMIIEDVVSNHTTNIA--DGDDINSPIVSSGQSEFLQDGV 160
Query: 467 IND-NIPGFIEASAAKADEE 523
ND NI + E + +++
Sbjct: 161 DNDGNIDDYEEYQSLPPNDD 180
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical protein
C09H6.1b protein.
Length = 1309
Score = 27.9 bits (59), Expect = 6.5
Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 3/150 (2%)
Frame = +2
Query: 104 HSVVHRSAGSDTVSSYERHNDEKPKSISFIQRLPADRAEIT*RSLVNTNVYESTENFHFN 283
H+++H G + + + D+K + +S + L +++ + R + + E
Sbjct: 841 HTIIHLGLGLNEAVPFVKRVDQKGRPVSSLTDLNSEK--MNERKSTKRKMLDKVEKMEVG 898
Query: 284 GDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP--FNDRDDINEPNIEFG-KNEI 454
DE ++ S + ++ R+ +E+ ++ P F E +N I
Sbjct: 899 EDEEDDEESVDKGTDDGDYKQRPEKKRKQSSEEPASDPELFGSSSQPTRQLSERATRNRI 958
Query: 455 IGSVINDNIPGFIEASAAKADEESNAADAG 544
S+++ N G S + A+ E A +G
Sbjct: 959 NYSLLSKNGSGKPTPSTSSANLEKLAGSSG 988
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical protein
C09H6.1a protein.
Length = 1311
Score = 27.9 bits (59), Expect = 6.5
Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 3/150 (2%)
Frame = +2
Query: 104 HSVVHRSAGSDTVSSYERHNDEKPKSISFIQRLPADRAEIT*RSLVNTNVYESTENFHFN 283
H+++H G + + + D+K + +S + L +++ + R + + E
Sbjct: 841 HTIIHLGLGLNEAVPFVKRVDQKGRPVSSLTDLNSEK--MNERKSTKRKMLDKVEKMEVG 898
Query: 284 GDEPTEKVSNKTNKNITQHESVSNANRRAIAEDESNVP--FNDRDDINEPNIEFG-KNEI 454
DE ++ S + ++ R+ +E+ ++ P F E +N I
Sbjct: 899 EDEEDDEESVDKGTDDGDYKQRPEKKRKQSSEEPASDPELFGSSSQPTRQLSERATRNRI 958
Query: 455 IGSVINDNIPGFIEASAAKADEESNAADAG 544
S+++ N G S + A+ E A +G
Sbjct: 959 NYSLLSKNGSGKPTPSTSSANLEKLAGSSG 988
>Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical
protein E01G6.2 protein.
Length = 204
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/74 (21%), Positives = 30/74 (40%)
Frame = +2
Query: 314 KTNKNITQHESVSNANRRAIAEDESNVPFNDRDDINEPNIEFGKNEIIGSVINDNIPGFI 493
K +K T E+ N + D N + +++ +FGK+ + ++ D +
Sbjct: 33 KNDKERTGKENKGIVNSNTMPADMDGGKKNKKTKVSKNGKDFGKSMSMDVLLEDEAAALV 92
Query: 494 EASAAKADEESNAA 535
EA DE+ A
Sbjct: 93 EALETFGDEKPTVA 106
>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
F01G4.3 protein.
Length = 1266
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 188 FIQRLPADRAEIT*RSLVNTNVYESTENFHFNGDEPTEKVSNKTNKNITQHESVSNANRR 367
F QR PA+ A + T Y S F GD ++S +T+ ESV++ ++
Sbjct: 1119 FHQRSPAELAALL---STLTCQYNSGREMQFGGDTVFGEISESVKSVLTRLESVASKHKS 1175
Query: 368 AIAEDESNVPFN 403
I++ + F+
Sbjct: 1176 QISDLGCEIRFD 1187
>U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical
protein M01A10.1 protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 207 PTALKLLEDHW*IQMFTNQQRTSISMATSQRRKFP 311
PTA+ D W Q FT Q + S+S+ Q +FP
Sbjct: 504 PTAI----DSWRAQPFTTQHQNSLSLPQPQAHQFP 534
>AF016418-10|AAK18896.1| 611|Caenorhabditis elegans Hypothetical
protein C49G7.1 protein.
Length = 611
Score = 27.9 bits (59), Expect = 6.5
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Frame = +3
Query: 18 IVCKTANTYLSMLIYKKVLCR-FPAMITRFTQLYIG----LLVAIPCLATNGTMTKNLKV 182
IV +N + + +KKV+ R I+ F + IG LL+ + CL G K
Sbjct: 183 IVTSLSNYFDEIFGHKKVIIRTIDQSISPFVFVGIGVGAFLLIMVVCLMIYGCTEHGRKT 242
Query: 183 LVSSNDYPPTALKLLEDHW*IQMFTN--QQRTSISMATSQRRK 305
+ Y ++K E+ W MF + + +I A +R K
Sbjct: 243 FKTYYLYYYGSIKAFENRWRYSMFLDAIDGKNAILDAVRERNK 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,479
Number of Sequences: 27780
Number of extensions: 266598
Number of successful extensions: 923
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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