Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j01
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.1  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   6.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.7  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 116 NVDDTRSVIKKLIYFVRWCFTSKTSLHYQASENWPRA 6
           +V    S + K +Y + W  +SKT L+   S  W ++
Sbjct: 528 DVPSGTSFVVKTLYALSWAHSSKTKLNISYSVEWSKS 564


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 45  SLRSEAPTYKINEFLNNATGIVNIKFPS 128
           +L S AP   I  F NN      +KFPS
Sbjct: 73  TLLSRAPCMNIRAFTNNVMKRFQVKFPS 100


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 149 HVTFIKKRRKFNVDDTRSVIKKLIYFVRWCFTSKTSLHYQASENWP 12
           H +F+ K++  + DD    +KKL    +  F+  T++HY + ++ P
Sbjct: 515 HESFVYKQQPPSTDDLYGTMKKL----KIPFSIPTNVHYSSEKDIP 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,016
Number of Sequences: 5004
Number of extensions: 61785
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)