Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j01
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1293 - 25945888-25946026,25946257-25946315,25946458-259465...    31   0.97 
08_01_0342 - 3016705-3016884,3016963-3017031,3017322-3017408,301...    28   9.1  

>08_02_1293 -
           25945888-25946026,25946257-25946315,25946458-25946543,
           25946800-25946845,25946953-25947405
          Length = 260

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 478 HDCVVHFRKC*SSRLGSM*HRKQLFSNLITNYITY 374
           HDC V    C     GS+  + +LFS  ++N+IT+
Sbjct: 141 HDCTVEMLSCRFEGSGSVEQQNELFSAFMSNHITW 175


>08_01_0342 -
           3016705-3016884,3016963-3017031,3017322-3017408,
           3017603-3017650,3017783-3017873,3018243-3018322,
           3018429-3018533,3019457-3019551,3019710-3019788,
           3020214-3020402
          Length = 340

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -3

Query: 127 EGNLMLTIPVALLRNSFILYVGASLLRLVFT 35
           EG L+L  PV  L   F  YVG  LLR   T
Sbjct: 244 EGQLLLLCPVLFLLQGFEGYVGFLLLRTAHT 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,747,683
Number of Sequences: 37544
Number of extensions: 357302
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)