Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30j01
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-7|CAB05764.2|  340|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006617-12|AAF39774.1|  324|Caenorhabditis elegans Serpentine r...    29   4.6  
Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL132948-11|CAC51063.1|  208|Caenorhabditis elegans Hypothetical...    28   8.1  

>Z83233-7|CAB05764.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.7 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 553 VTCFQIEVKKINTLLKSAMLRCLRRHDCVVHFR 455
           ++CF  ++    T+ K+ + RC R  +C +HF+
Sbjct: 18  MSCFACKMFFHRTVYKNLLFRCKRIQNCTIHFK 50


>AC006617-12|AAF39774.1|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 67 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 272 AVSTLFPFS--IFLITKVVNHCSIDEQLVIVHP 364
           +V  +FPFS  I ++T   NH ++  + +I+HP
Sbjct: 134 SVHYIFPFSSQILMLTAPSNHAAVHNETLILHP 166


>Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical
           protein K01C8.9 protein.
          Length = 556

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 453 LRKCTTQSCRLRHRNMADFNNVFIFFTSIWKHV 551
           LR+C+ ++  L H N+ADFN+V  F   + + +
Sbjct: 349 LRRCSKETIML-HYNLADFNSVDQFLAQLARRI 380


>AL132948-11|CAC51063.1|  208|Caenorhabditis elegans Hypothetical
           protein Y39B6A.13 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +3

Query: 27  RLVVKTSLRSEAPTYKINEFLNNATGIVNIKFPSFFYKCYVKSFNY 164
           RL+VK S++ +  TY+  + +N     ++ +FP F +K ++ +F +
Sbjct: 41  RLIVKISMQ-KLDTYEAGKEVNRENPQISAQFPDFLFK-FLHAFQF 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,412
Number of Sequences: 27780
Number of extensions: 352408
Number of successful extensions: 886
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)