Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i24
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   8.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 636 LYPINDPKRSLKV*RQSRALAP*TVVWRNTSYSECHSPS 520
           ++P +DP  S  +   S      T VW+N   +   SPS
Sbjct: 192 IFPFDDPLCSFAIESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 636 LYPINDPKRSLKV*RQSRALAP*TVVWRNTSYSECHSPS 520
           ++P +DP  S  +   S      T VW+N   +   SPS
Sbjct: 192 IFPFDDPLCSFAIESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 636 LYPINDPKRSLKV*RQSRALAP*TVVWRNTSYSECHSPS 520
           ++P +DP  S  +   S      T VW+N   +   SPS
Sbjct: 243 IFPFDDPLCSFAIESISYEQTAITYVWKNDEGTLRKSPS 281


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 636 LYPINDPKRSLKV*RQSRALAP*TVVWRNTSYSECHSPS 520
           ++P +DP  S  +   S      T VW+N   +   SPS
Sbjct: 192 IFPFDDPLCSFAIESISYEQTAITYVWKNDEGTLRKSPS 230


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 154 PLLNHQGRIQHLDGNPPGHLSHYPTKLPLIATDH 255
           P + H G     +G+P   + +   KL   A DH
Sbjct: 117 PGMGHMGHTPTPNGHPSTPIVYASCKLQAAAVDH 150


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 201 TGAPFTLPNETPTDSYGPPEETA 269
           +G P  + NETP  S G    TA
Sbjct: 57  SGQPKQVDNETPVVSQGSDSYTA 79


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 174 PYPASGWKPTGAPFTLPNETPT 239
           P P+ G  P G P   P++ P+
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPS 61


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 180 PASGWKPTGAPFTLPNETPTDSYGPPEETAD 272
           P+S   PT  P+    E  T+S  P     D
Sbjct: 122 PSSQASPTSIPYATRAEIKTESIQPETTKVD 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,611
Number of Sequences: 438
Number of extensions: 5795
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)