Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30i22
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 39 5e-04
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 38 0.001
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 33 0.026
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 31 0.18
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.18
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 29 0.74
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 28 1.3
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 27 1.7
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 1.7
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 27 3.0
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 27 3.0
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa... 26 3.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.9
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 26 3.9
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 3.9
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 26 5.2
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 26 5.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 6.9
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 6.9
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 6.9
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.1
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 9.1
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 231 ENADTGEKLSYKEIAQYVVNLSASLTSLGVGRGDTVALGSEKHNEFVPTLLAIVLTGATY 410
+ + G ++Y+E+ V + +L S+GVG GD VA+ E + +LAIV GA +
Sbjct: 110 DEPNQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMIPETIIAMLAIVRLGAIH 169
Query: 411 T 413
+
Sbjct: 170 S 170
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 228 IENADTGEKLSYKEIAQYVVNLSASLTSLGVGRGDTVALGSEKHNEFVPTLLAIVLTGAT 407
+ N D SYK ++Y + S L S+G+ + D VA+ +K ++ +L ++ GA
Sbjct: 1772 VYNVDKENIYSYKFFSEYSIKASYWLHSIGIKKNDVVAVFIDKSLDYYSLMLGVLRIGAF 1831
Query: 408 YTPYD 422
+ P +
Sbjct: 1832 FFPLE 1836
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 33.5 bits (73), Expect = 0.026
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = +3
Query: 258 SYKEIAQYVVNLSASLTSLGVGRGDTVALGSEKHNEFVPTLLAIVLTGATYTPYDLKVGK 437
+Y++I + L+ L G+ RGD V + + + + V ++ ++ GAT++ D
Sbjct: 314 TYRQIDESSNILAHHLVKNGIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVIDPAYPP 373
Query: 438 ASLKHKLSVVKPKYFI 485
A LSV KP+ +
Sbjct: 374 ARQIIYLSVAKPRALV 389
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 30.7 bits (66), Expect = 0.18
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +3
Query: 252 KLSYKEIAQYVVNLSASLTSLGVGRGDTVALGSEKHNEFVPTLLAIVLTGATYTPYDLKV 431
+LS+ E+ +++L + SLG+ GD V + EFV A+ A P +
Sbjct: 27 ELSFSELRIAIMDLQRQIASLGIKVGDPVNIAIPNGLEFVVAFYAVSWQRAICGPLNSNY 86
Query: 432 GKASLKHKLSVVKPKYFI 485
++ + + +K K I
Sbjct: 87 KQSEFEFYIDDLKSKLVI 104
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 30.7 bits (66), Expect = 0.18
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 12 VLFSTSITCFKLFLIGKKLPVFYFSSL*FKIYIKMPYNYNFVFGDKNVQVP 164
V+F+ + K+ ++G ++ V +S+ + + PYN +F + N+ VP
Sbjct: 448 VIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 498
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 365 ICSDFACNCI--DWSHLYTLRFESWKSLVKTQTKCSET*IFYLF 490
IC+ FA DWS+ ESW+ + T K S + FY F
Sbjct: 1350 ICASFAVEAKINDWSYYIDFGSESWERIRNTPLKRSLSTTFYSF 1393
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 362 IVFFRPECHCITSSDPKARQRRGKVHNI 279
I FF PE H T D KAR R K N+
Sbjct: 272 IFFFMPETHGDTILDYKARYLRNKTRNM 299
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 437 FSNFQIVRCIGGSSQYNCKQSRNKF 363
F++F CI G+ +Y+ + SR+KF
Sbjct: 539 FTSFSCYNCISGTRKYSRQYSRDKF 563
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +3
Query: 291 LSASLTSLGVGRGDTVALGSEKHNEFVPTLLAIVLTGATYTPYDLKVGKASLKHKLSVVK 470
LS + LGV T + HN+F L A++ TG ++ + S K K ++
Sbjct: 1353 LSGADPVLGVEMASTGEVACFGHNKFEAYLKAMISTGFRLPKKNILISIGSYKEKAELLP 1412
Query: 471 PKYFIYSNKF 500
+Y N +
Sbjct: 1413 YVKKLYENNY 1422
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 396 SIQLQAKSEQIHCVFPTRVPLYHLFRPQGSSKTRKGSQHTVRFL-CTIVFH 247
++ ++A + +FPT P YHL +G +K K H V L +VFH
Sbjct: 285 ALLVKASVHRDGALFPT-FPFYHLIESEGFAKMAKRLGHGVYGLPYYLVFH 334
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 307 VKDAERFTTYCAISLYDSFSPVSAFSIAIWSFHCR 203
V+ A+ T +C I +DSF+PV W R
Sbjct: 507 VQVAQGLTAWCEIHRFDSFAPVRTNVAVQWMVDAR 541
>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 359
Score = 26.2 bits (55), Expect = 3.9
Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +3
Query: 234 NADTGEKLSYKEIAQYVVNLSAS-LTSLGVGRGDT-VALGSEKHNEFVPTLLAIVLTGAT 407
N DT K+ +A + + + DT +A GS+ E P + +TG
Sbjct: 240 NGDTANKIGTYNLAILAKHFGKPFIVAAPFSSIDTSLASGSQITIEQRPPIEMTTITGPI 299
Query: 408 YTPYDLKVGKASLKHKLSVVKPKYFIYSNKFWLTYSDVLKSFDCIQTYFTLEDNSE 575
T + + + + ++S+ P +YS F +T ++++ + + ++T + N++
Sbjct: 300 ITDSNSRNLEDPKRVRISIAAPGIDVYSPAFDVTPANLITAIATEKGFYTQQTNNK 355
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 425 ESWKSLVKTQTKCSET*IFYLFK*VLVD 508
ESWK++V K SET I+ L K VL D
Sbjct: 620 ESWKNIVMELIKASET-IWGLIKDVLCD 646
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 67 YQCSISLLCNLKSTLKCRIIIILCLVIKTFKYRHI*ILGNSCWSISDS 210
Y+ ++ L NL+ + I+IIL I T+ + + ++ S WS S S
Sbjct: 6 YKQRLTALNNLRIVIFFDILIILLGYIGTWNLKTLQLVNPSLWSFSPS 53
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 213 NDQIAIENADTGEKLSYKEIAQYVVNLSASLTSLG 317
+D AIE AD EKL KE Y + S S G
Sbjct: 35 DDSEAIETADDNEKLFKKECVAYDAGVYTSNKSKG 69
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 120 YNYNFVFGDKNVQVPAHLNFGQFMLEHIRQWNDQIAIENAD 242
Y NF N +P + ++ + L I+QW I ENAD
Sbjct: 88 YLNNFQEKLLNGSIPVNFSYPENPLCFIKQWTPVIDAENAD 128
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -2
Query: 239 SIFYCNLVIPLSDMLQHELPKI*MCRYLNVFITKHKIII 123
++F ++ P+S +LQH LPK+ + R V+ T ++++
Sbjct: 314 ALFILSIHTPMS-VLQHLLPKLGISRPFMVYSTYQQVLV 351
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 6.9
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +3
Query: 378 LLAIVLTGATYTPYDLKVGKASLKHKLSVVK--------PKYFIYSNKFWLTYSDVLKSF 533
L+++V+ T + DL+ + K + SV K KY YSN W+++
Sbjct: 473 LMSLVIAVVTSSFIDLQHSGKNQKEQKSVDKHLIRNKLCEKYLFYSNFIWISFIVAQFVT 532
Query: 534 DCIQTY 551
C QTY
Sbjct: 533 LCTQTY 538
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 543 QTYFTLEDNSEGVVSIKSLASK 608
+TYFTL +N++GV S+AS+
Sbjct: 515 ETYFTLMNNNKGVEPRASVASE 536
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 221 NCNRKC*YR*KTIVQRNRTVCCEPFRVFDEPWG 319
+C+ +C R +VQR RT+ E F+ ++ WG
Sbjct: 312 SCSMECPNR---VVQRGRTLPLEIFKTKEKGWG 341
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 241 SAFSIAIWSFHCRICSNMN 185
S FS+ W CR C N N
Sbjct: 2561 SRFSLMEWRSQCRACGNSN 2579
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 534 DCIQTYFTLEDNSEGVVSIK---SLASKYVDVDL 626
D +TYF +ED +G K S+Y+DV +
Sbjct: 905 DLAKTYFFIEDEGDGTYKFKLTYGAFSEYLDVKI 938
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,173
Number of Sequences: 5004
Number of extensions: 64754
Number of successful extensions: 170
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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