Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i20
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    26   4.6  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   4.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   6.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   8.0  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    25   8.0  

>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 154 VENYLDCVENLPNDLQRHLSRMRELDVTYRECLRE 258
           + NY +  E L N++   L + +ELD+  ++C+RE
Sbjct: 48  ISNYTNGRE-LQNEISSLLKQDKELDLQIQDCMRE 81


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +1

Query: 103 IAMLNQTSTEALLSAAYVENYLDCVENLPNDLQRHLSRMRELDVTYRECLRE 258
           +  L   S E L  A+  +    CV  +P   ++ +S++ E   +Y E ++E
Sbjct: 97  VPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKESYEEIIKE 148


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 475 NGTTKEEVTPTQDVLSKTEKEASVLTTPHQNIAPPPPPERT 597
           NG++   + P      ++    S+   P    APPPPP R+
Sbjct: 329 NGSSNSSLPPPPPP-PRSNAAGSIPLPPQGRSAPPPPPPRS 368


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 349 AAQEIGDEKLQVVQILQDLIDNKQRSLDSDHKKLLSCIE-VTTNGTTKEEVTPTQDVLSK 525
           + + I +E  + ++ L D    K R L S  +        +T+N   K+E+T  +  +S+
Sbjct: 405 SCETIREENQKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTVSE 464

Query: 526 TEKEASVLTTPHQ 564
           +E E   L +  Q
Sbjct: 465 SEAERKRLFSSAQ 477


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 331 GVVQLWFDGVPLCLILYKYL 272
           G+VQ W + V LC I+++ L
Sbjct: 388 GLVQFWLNQVELCKIIHRML 407


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 391 ILQDLIDNKQRSLDSDHKKLLSCIEVTTNGT 483
           IL D+I+ KQ +    HK  L+C+   ++GT
Sbjct: 171 ILWDVINCKQITKIEAHKDSLACLAFNSDGT 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,214
Number of Sequences: 5004
Number of extensions: 40732
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)