Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30i20
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1128 + 30590727-30590772,30590868-30590939,30591181-305913... 36 0.024
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 35 0.073
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672... 31 0.90
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 29 3.6
08_02_1256 + 25645085-25645396 29 4.8
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623 29 4.8
02_03_0279 + 17250347-17252098 29 4.8
07_01_1101 + 10122804-10123758,10123872-10123910,10124072-101242... 28 8.4
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 28 8.4
>03_05_1128 +
30590727-30590772,30590868-30590939,30591181-30591371,
30592004-30592067,30592713-30592963,30593066-30593104,
30593193-30593213
Length = 227
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 142 SAAYVENYLDCVENLPNDLQRHLSRMRELDVTYRECLREAEKHLNICIG 288
+ YV++YL+ L DLQR LS MRELD + + ++ + +G
Sbjct: 6 TGVYVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTKEQIKYLLG 54
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 34.7 bits (76), Expect = 0.073
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 367 DEKLQVVQILQDLIDNKQRSLDSDHKKLLSCIEVTTNGTTKEEVTPTQDVLSKTEKEASV 546
D + ++++ D + R DS ++ +CI T+G E+V P D++ K +++
Sbjct: 489 DSDISFLKLVPDDAEETLRPSDSHPLEVSACIPDRTSGMEIEDV-PEPDLIEKFKEDVEK 547
Query: 547 LTTPH-QNIAPPP 582
LT P +N+A P
Sbjct: 548 LTEPETENVAEQP 560
>11_05_0065 +
18766566-18766576,18767023-18767083,18767170-18767268,
18767346-18767467,18767577-18767673,18767778-18767824,
18768020-18768203,18768349-18768400,18768795-18768985,
18769072-18770020,18770866-18771022,18771134-18771206,
18771292-18771465,18771880-18771993,18772110-18772236,
18772331-18772443,18772614-18772729,18772847-18773000
Length = 946
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 106 AMLNQTSTEALLSAAYVENYLDCVENLPNDLQRHLSRMRE 225
A+L T A + +EN++ E LP +L+RHL+ + E
Sbjct: 469 AVLESTGLTAFDLSKIIENFVRHEETLPRELKRHLNSLEE 508
>03_01_0306 +
2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 151 YVENYLDCVENLPNDLQRHLSRMRELD 231
++E++ VE LP LQR+ S MRELD
Sbjct: 3 FLEDFQASVEALPAMLQRNYSLMRELD 29
>08_02_1256 + 25645085-25645396
Length = 103
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 487 KEEVTPTQDVLSKTEKEASVLTTPHQNIAPPPPP 588
+EE+ Q L++T+ ++ Q PPPPP
Sbjct: 34 QEEIRAVQCELARTQAHLAIAVASSQQPPPPPPP 67
>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
Length = 400
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 652 SKRPRRSRTTAGAXTDGS 705
S RPRRSR TAG DGS
Sbjct: 74 SPRPRRSRPTAGDDADGS 91
>02_03_0279 + 17250347-17252098
Length = 583
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 478 GTTKEEVTPTQDVLSKTEKEASVLTTPHQNIAPPPPP 588
G EE TPT ++ + ++A+ + P PPPPP
Sbjct: 101 GAAAEEATPT--LIDDSPQQAAAASPPPPPPPPPPPP 135
>07_01_1101 +
10122804-10123758,10123872-10123910,10124072-10124251,
10124841-10124951,10125448-10125560
Length = 465
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 496 VTPTQDVLSKTEKEASVLTTPHQNIAPPPPP 588
+T D +++ + +A+ TT PPPPP
Sbjct: 27 MTAEADAINEEQDKAAAATTADHTAPPPPPP 57
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 127 TEALLSAAYVENYLDCVENLPNDLQRHLSRMRELDVTYRECLREAEK 267
+E+ A+ +E+YL C E L ND + D+T E E E+
Sbjct: 116 SESSCLASVLESYLACPEQLANDAETTAYSSAREDLTLSETEEEEEE 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,166
Number of Sequences: 37544
Number of extensions: 260121
Number of successful extensions: 1553
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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