Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i20
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    27   0.23 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.7  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 100 SKLTFHNSNQINYTKNTSKANKQNKFTIFNN 8
           S  T HN+N   Y  N +  N  N    +NN
Sbjct: 319 SNKTIHNNNNYKYNYNNNNYNNNNYNNNYNN 349


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 100 SKLTFHNSNQINYTKNTSKANKQNKFTIFN 11
           S  T HN+N   Y  N +  N   K   +N
Sbjct: 86  SNRTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 100 SKLTFHNSNQINYTKNTSKANKQNKFTIFN 11
           S  T HN+N   Y  N +  N   K   +N
Sbjct: 86  SNKTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 100 SKLTFHNSNQINYTKNTSKANKQNKFTIFN 11
           S  T HN+N   Y  N +  N   K   +N
Sbjct: 86  SNKTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 100 SKLTFHNSNQINYTKNTSKANKQNKFTIFN 11
           S  T HN+N   Y  N +  N   K   +N
Sbjct: 86  SNKTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 319 LWFDGVPLCLILYKY 275
           +W   VPL LI+Y Y
Sbjct: 222 IWVYFVPLFLIIYSY 236


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 292 LILYKYLDAFLPHANI-PYM 236
           ++ ++YLDA L  +NI PY+
Sbjct: 65  MLQFRYLDARLKFSNIAPYL 84


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 319 LWFDGVPLCLILYKY 275
           +W   VPL LI+Y Y
Sbjct: 98  IWVYFVPLFLIIYSY 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,265
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)