Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30i16
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 54 2e-08
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 46 6e-06
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 37 0.003
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 29 0.60
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 1.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.4
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 27 3.2
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 25 7.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 7.4
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 9.8
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 9.8
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 54.0 bits (124), Expect = 2e-08
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 395 WHSMALSEFGDLYVWGLNDTGQLGIK-ESENDLKSYALPKLVDLYDDNEEVHLQIKDIAC 571
+HS A+ G +Y WGLN T Q GI+ E E + P LVD + +K I
Sbjct: 289 YHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEG-----YNVKSITG 343
Query: 572 GSKHSVLLLEDGSVWTTGANKYGQLACP 655
G H++ LLEDG V G + QL P
Sbjct: 344 GEHHTLALLEDGRVLAWGRDDRHQLGIP 371
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +2
Query: 425 DLYVWGLNDTGQLGIKESENDLKSYALPKLVDLYDDNEEVHLQIKDIACGSKHSVLLLED 604
++YV+G +LG+ E E D+ Y P+L + ++ + + D+A G HS L D
Sbjct: 72 NVYVFGSGSMNELGMGEEEMDVV-YR-PRLNPILSTDK---VGVVDLAVGGMHSAALSHD 126
Query: 605 GSVWTTGAN 631
G V+T G N
Sbjct: 127 GRVYTWGVN 135
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 311 QDDTSNLETPTQVEXXXXXXXXXXXXXXWHSMALSEFGDLYVWGLNDTGQLGIKESENDL 490
+++ + + PT V+ H++AL E G + WG +D QLGI ++
Sbjct: 318 EEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPE 377
Query: 491 KSYALPKLVDLYDDNEEV---HLQIKDIACGSKHSVLLLEDGSVWTTGA 628
K + Y + + + CG+ H++ + DG V++ G+
Sbjct: 378 TVVKDEKGNNYYLSTPTIIPGLTNVIQVVCGTHHNLAVTSDGKVYSWGS 426
Score = 34.7 bits (76), Expect = 0.012
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +2
Query: 398 HSMALSEFGDLYVWGLNDTGQLG-----IKESENDLKSYALPKLVDLYDDNEEVHLQIKD 562
HS ALS G +Y WG+ND LG K+ D L + + HL++
Sbjct: 119 HSAALSHDGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTK 178
Query: 563 IACGSKHSVLLLEDGSVWTTG 625
+ C + + ++G +T G
Sbjct: 179 VICSDNLTAAITDNGCCFTWG 199
Score = 28.7 bits (61), Expect = 0.80
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = +2
Query: 398 HSMALSEFGDLYVWGLNDTGQLGIKESENDLKSYALPKLVDLYDDNEEVHLQIKDIACGS 577
H +AL+ G +Y WG QLG + E P+ + L + I + GS
Sbjct: 237 HIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALKN--------IISVGAGS 288
Query: 578 KHSVLLLEDGSVWTTGAN 631
HS + G V+ G N
Sbjct: 289 YHSFAIDNKGRVYAWGLN 306
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 45.6 bits (103), Expect = 6e-06
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +2
Query: 398 HSMALSEFGDLYVWGLNDTGQLGIKESE--NDLKSYALPKLVDLYDDNEEVHLQIKDIAC 571
HS+AL++FG +Y WG N +G+LG+ E D P+ + + D QI +A
Sbjct: 258 HSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRRISAFKD-----YQIIGMAA 312
Query: 572 GSKHSVLLLEDGSVWTTGANKYGQL 646
G +SV D +++ G N GQL
Sbjct: 313 GKSYSV-AWTDTDIYSWGLNN-GQL 335
Score = 25.0 bits (52), Expect = 9.8
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +2
Query: 332 ETPTQVEXXXXXXXXXXXXXXWHSMALSE--FGDLYVWGLNDTGQLGIKESENDLKSYAL 505
E+PT + +HS+ L++ ++YV G+ G++G ++ +
Sbjct: 184 ESPTSGQLFSRDKILDVQASKFHSVVLTDEPSQNVYVCGIGAGGRIGFN-TDVQYNFIPI 242
Query: 506 PKLVDLYDDNEEVHLQIKDIACGSKHSVLLLEDGSVWTTGANKYGQL 646
P ++ ++ I+ HS+ L + GS+++ G N G+L
Sbjct: 243 PGIIH----------KVIQISVSHTHSLALTKFGSIYSWGKNGSGEL 279
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 554 IKDIACGSKHSVLLLEDGSVWTTGANKYGQ 643
I+ I+CG H++LL ED +W G N+ GQ
Sbjct: 33 IEKISCGGNHTLLLDEDSQLWACGDNRKGQ 62
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 527 DDNEEVHLQIKDI---ACGSKHSVLLLEDGSVWTTGANKYG 640
D ++ H + DI A G++H++L + GSV G N++G
Sbjct: 270 DRAQKAHTKASDIVQIASGTEHNILRTKKGSVLIYGWNEHG 310
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 29.1 bits (62), Expect = 0.60
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +2
Query: 446 NDTGQLGIKESENDLKSYALPKLVDLYDDNEEVHLQI-----KDIACGSKHSVLLLED 604
N++ QL I + ++ ++L K+ +DD E LQI KD+ C + + + +E+
Sbjct: 1819 NNSSQLSIDSVRSGMRPFSLSKVPHQFDDEEGKALQIFREKLKDLNCKNSMNEMCIEN 1876
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 1.8
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Frame = -3
Query: 356 GLQPVWVSLNCLYHPDLVAISFGR*FKRQFSIQINILYAIIFQIQYPKGTRIIVANNQVV 177
GL V ++ + + P LV +F + + INI P+ + N+ +
Sbjct: 222 GLSVVAIATSVSFQPILVGKAFSSTAGMKATESINIYTLPFCSDSIPRLQTLPALNSSKI 281
Query: 176 VVTGNEWRFSAL---FWYI-NFLSDFPTVKGAQ*IKIFS*LKY 60
++TG E + L F+Y L F V +K+F L Y
Sbjct: 282 IITGEEEKLQRLEEAFYYAEEHLKLFTHVTEISFVKLFEFLAY 324
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 401 SMALSEFGDLYVWGLNDTGQLGIKESENDLKSYALP---KLVDLYDDNEEVHLQIKDIAC 571
++ E +LY+ N TG+L IK E L+ P L ++ +E+ + ++ ++
Sbjct: 987 TLRTKELFELYLSQRNFTGKLVIKHQEEFLEPRVYPANRNLATAHNRHEKSKVSVQGLSG 1046
Query: 572 GSKHSVLLLEDGSVW 616
G K + S+W
Sbjct: 1047 GEKSFATICMLLSIW 1061
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 87 LLGAFDGRKIAKKIDIPEECRKSPLVAGNDYNLVIGHNNSSALWILNLEDNSIKNVYLDR 266
L+G G KI KS +VA + G + +S +LN + ++KN Y+ +
Sbjct: 402 LIGCSAGFVNVAKIKGTHTAMKSGIVAADAIVDAFGRDAASKPLLLNDYEENLKNTYVFK 461
Query: 267 EL 272
EL
Sbjct: 462 EL 463
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 515 VDLYDDNEEVHLQIKDIACGSKHSVLLLEDGSVWTTGA 628
+D+YDD H Q CG + + + SV TG+
Sbjct: 155 LDVYDDESLYHPQTHKEDCGKRLQTRIQPEESVGKTGS 192
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 602 DGSVWTTGANKYGQLA 649
DG VW T AN YG A
Sbjct: 225 DGCVWGTSANPYGNWA 240
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 9.8
Identities = 6/28 (21%), Positives = 19/28 (67%)
Frame = +3
Query: 174 DYNLVIGHNNSSALWILNLEDNSIKNVY 257
D+ ++ ++ + W+++ +DNS++ +Y
Sbjct: 299 DFLAIVAYDMENGKWLVDEDDNSLRLIY 326
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.0 bits (52), Expect = 9.8
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 413 SEFGDLYVWGLNDTGQLGIKESENDLKSYALPKLVDLYDDNEEVHLQIKDIACGSKHSVL 592
++F +L G G++ ++ D + YA+ KLV L DD E + + + H
Sbjct: 554 TDFEELEFLGRGGFGEVVKVKNRIDGRFYAVKKLVLLSDDKENSRILREVMTLSRLHHEH 613
Query: 593 LLEDGSVWT-TGAN 631
++ + W T AN
Sbjct: 614 VVRYYTAWVETEAN 627
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,717
Number of Sequences: 5004
Number of extensions: 60037
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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