Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30i13
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 31 0.14
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 1.3
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 4.0
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 4.0
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 4.0
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 27 4.0
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 5.3
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 26 5.3
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 5.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.3
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 5.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 7.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.3
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 9.3
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 9.3
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 9.3
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +1
Query: 418 DVALSRLSADENSCVKCEKI------IDEIFGKDAKWDDKYMLGNATRLPNEDLTILPKD 579
D++L +L E + C I DE F K A D Y++GN + EDL+ LP
Sbjct: 718 DLSLEKLPTLEINTFNCPAISYFETSFDECFSKFAS-SDNYIIGNLLKTNQEDLSNLPTF 776
Query: 580 NNIGIRLDN 606
+ +R+ N
Sbjct: 777 RSQALRVLN 785
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 484 EIFGKDAKWDDKYMLGNATRLPNEDLTILP-KDNN--IGIRLDNTDAKNVGEKLKEAA 648
E+ K+ K D K + ++D P KD+N + + D+K+V EK++EAA
Sbjct: 503 EVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAA 560
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 4.0
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 145 TAAVRTVNKANPAAFLFRISLADCNTHGKIAKSIAIL---QSKLQKSTKSGSEDEAKCAK 315
T+ VR ++ L +I+ +D TH ++ IA+L +++ K + S + C K
Sbjct: 79 TSIVREISSRTFTDSLLKIA-SDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEK 137
Query: 316 CKK--IIDLVFGPNKP 357
+K I+DL P KP
Sbjct: 138 IRKLDIVDL-RAPKKP 152
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 557 SSLGKRVAFPSMYLSSHFASLPKISSIIFSHLTQLFSSALNLDKAT 420
+S+G + S YL S A + K+ S+ S L + S+ LN+ T
Sbjct: 870 TSIGLLLGLASSYLGSMDAKVTKLLSVHISALLPVGSNELNISPLT 915
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -1
Query: 485 SSIIFSHLTQLFSSALNLDKATSLHLSLALLKTCASLESSCT 360
S + + LT+LF ++ + KA++ + LLKTC+ L SSC+
Sbjct: 500 SDTLDAWLTRLFETSFAI-KASAFQ-NPQLLKTCSQLLSSCS 539
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 229 KIAKSIAILQSKLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSKDAHV 390
++ +SI ++ ST K I+ FG K IVHE SKD ++
Sbjct: 315 ELYQSILRKRANQVSSTSLTKSSSPKPLPSSAIVKFDFGNGKSIVHEFSKDDNI 368
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 367 EDSKDAHVFNKASDKCKDVALSRLSADEN 453
E SK V +++SD+ KD ++R++AD++
Sbjct: 53 ETSKKLLVSHESSDRLKDQEVARINADDD 81
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 5.3
Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 2/133 (1%)
Frame = -1
Query: 767 VVAKGNXLDSFKTSIFWFDTS--FPSPSELFCLDLSLIAKQMAASFNFSPTFFASVLSKR 594
VVA T F+F S + + S++F LSL + F F + S
Sbjct: 219 VVALSIVCTMVSTGYFYFANSKGYTTGSKVFAFFLSLAQSARQSYFGFLLLIVSLGYSIV 278
Query: 593 IPILLSLGKIVRSSLGKRVAFPSMYLSSHFASLPKISSIIFSHLTQLFSSALNLDKATSL 414
+P L SL + + G + +LSS F S S++ +F L A L
Sbjct: 279 VPSLGSLLRKCQILAGLQFVSSCFFLSSLFISPSNKESLVILFAAPVFLITL---FAMFL 335
Query: 413 HLSLALLKTCASL 375
+ LAL T L
Sbjct: 336 WIVLALNNTIRDL 348
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = -1
Query: 680 CLDLSLIAKQMAASFNFSPTFFASVLSKRIPILLSLGKIVRSSLGKRVAF 531
CL+++L+ + +++ ++ AS KRI +++++ + + G +A+
Sbjct: 607 CLNINLLLQHLSSEYSQISGQDASNAQKRIEVIVNVNNVYGTIFGNELAY 656
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 5.3
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +1
Query: 394 NKASDKCKDVALSRLSADENSCVKCEKIIDEIFGKDAKWDDKYMLGNATRLPNEDLTILP 573
NK D+ K++ S L +N + + + K+ + KY+ GNA L N +L +
Sbjct: 604 NKLQDREKELT-SNLEK-KNLVISSLRETVAMLEKERESIKKYLSGNAKDLDNTNLMEIL 661
Query: 574 KDNNIGIRLDNTDAK---NVGEKLKEAAI 651
D ++ TD K +V E+ +E AI
Sbjct: 662 NDKISVLQRQLTDVKDELDVSEEEREEAI 690
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -1
Query: 521 YLSSHFASLPKISSIIFSHLTQLFSSALNLDKATSLHLSLALLKTCASLESSCTIGLLGP 342
Y+S H+ L +ISS + S+ + S+ N +K + L + +L ++ C P
Sbjct: 306 YISLHYDFLGQISSHLSSYKEKFEESSKNFEKLVIMSLRVFIL----VIQEFCNTKSSHP 361
Query: 341 NTKSIIF 321
T +++
Sbjct: 362 ETAQVLY 368
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 262 KLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPI 360
KL S++ S+D+ K CK +D+ G + PI
Sbjct: 57 KLDPSSEDFSQDDQKQIFCKLCVDICNGCSTPI 89
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 613 AKNVGEKLKEAAICLAINDKSRQKSSLGDGKDVSNQK 723
+KN G K + ++ D+ +K + G+GK N+K
Sbjct: 85 SKNNGHKASDIVDAVSSKDEELRKHAKGEGKRSKNRK 121
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 141 HFVSKLEVMGVTSVENYIFIFFLYRYMIFFIFENY 37
HF+ K+ + V + F F + ++F+IF ++
Sbjct: 102 HFLEKISMFDTFLVRVFQFCAFFFGGIVFYIFNHF 136
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 535 HSPA--CTYHPTLRLYQRSHQLSSRI*HNYFHRHLISIKQHLCIY 407
H P C Y L Y S++ ++I H FH +L I ++ Y
Sbjct: 144 HGPKGMCDYCSPLEPYDESYRQENKIKHLSFHAYLRKINSNVNKY 188
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 9.3
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 547 PNEDLTILPKDNNIGIRLDNTDAKNVGEKLKEAAICL--AINDKSRQKSSLGDGKDVSNQ 720
P +++ + + N RLD+ A +V + K + + L I DKS + KDVSN
Sbjct: 612 PTQNMQLPWQAVNGNNRLDHDFAFHVDDNFKVSFMFLDIPIEDKSNGSKGVSATKDVSNG 671
Query: 721 K 723
K
Sbjct: 672 K 672
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,722
Number of Sequences: 5004
Number of extensions: 66349
Number of successful extensions: 208
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -