Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i12
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0005 + 34977-35516,35620-35777,35889-37192,37532-37626,387...    62   5e-10
11_01_0006 + 36564-37103,37207-37364,37476-38779,39119-39213,403...    62   5e-10
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793           29   5.5  
11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517...    29   5.5  
04_03_0263 - 13605195-13607366,13607535-13607702                       28   9.7  

>12_01_0005 +
           34977-35516,35620-35777,35889-37192,37532-37626,
           38738-38816,38938-38954
          Length = 730

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
 Frame = +3

Query: 525 IKKYDIIAVIPKTLQAFQYAC-SSMD-IDIISFETEGRIPFKVHRKLYKQAVDRGIFFEI 698
           ++ YDI+A  P T  AF + C ++ D +DI+S +   ++PF++   + K A+ RG+  EI
Sbjct: 101 LRTYDIVAARPLTQAAFDHLCHATFDHLDIVSIDFSHKLPFRLKLPMLKLALQRGLHLEI 160

Query: 699 MYSPIIRDSTARKNIISNA 755
            YSP+I D+ +R+  ++ A
Sbjct: 161 AYSPLIADAASRRQAVAEA 179


>11_01_0006 +
           36564-37103,37207-37364,37476-38779,39119-39213,
           40324-40402,40524-40540
          Length = 730

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
 Frame = +3

Query: 525 IKKYDIIAVIPKTLQAFQYAC-SSMD-IDIISFETEGRIPFKVHRKLYKQAVDRGIFFEI 698
           ++ YDI+A  P T  AF + C ++ D +DI+S +   ++PF++   + K A+ RG+  EI
Sbjct: 101 LRTYDIVAARPLTQAAFDHLCHATFDHLDIVSIDFSHKLPFRLKLPMLKLALQRGLHLEI 160

Query: 699 MYSPIIRDSTARKNIISNA 755
            YSP+I D+ +R+  ++ A
Sbjct: 161 AYSPLIADAASRRQAVAEA 179


>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
          Length = 783

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 489 SGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMD 599
           S IVHKL  S+ +  +D+ ++    L AFQ+   +MD
Sbjct: 241 SPIVHKLQGSDLLTTHDVQSIKDLLLNAFQWPPPNMD 277


>11_01_0643 -
           5174154-5174254,5174296-5174346,5174611-5174739,
           5174869-5175118,5175220-5177157
          Length = 822

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 489 SGIVHKLNRSENIKKYDIIAVIPKTLQAFQYACSSMD 599
           S IVHKL  S+ +  +D+ ++    L AFQ+   +MD
Sbjct: 244 SPIVHKLQGSDLLTTHDVQSIKDLLLNAFQWPPPNMD 280


>04_03_0263 - 13605195-13607366,13607535-13607702
          Length = 779

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -1

Query: 262 LLIDKSQNPQLLDMLNKPPNLLI 194
           LL +K+QN QLLDM++K  N ++
Sbjct: 680 LLREKAQNDQLLDMIDKHSNDMV 702


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,247
Number of Sequences: 37544
Number of extensions: 327957
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)