Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i12
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical ...    40   0.002
U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical
           protein H35B03.2a protein.
          Length = 393

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
 Frame = +3

Query: 393 KDFVPPP--MDLPKDNNFQTK-----LNILQRITIEFSDSGIVHKLNRSENIKKYDIIAV 551
           K  +PPP  +D+ + N  + +          RIT   ++  +++K+     I  YDI+AV
Sbjct: 116 KKLIPPPHYVDVSQLNTSELEKRGKVFRQFSRITFTANEQVVINKVFIHPTILSYDIVAV 175

Query: 552 ---IPKTLQAFQYACSSMDIDIISFETEGRIPFKVHRKLYKQAVDRGIFFEIMYSPIIRD 722
               P  L          DI  I    E R  +    K+  +  + G+F+EI Y+  +  
Sbjct: 176 RPGEPSVLDTLSRKTELFDIITIDHLEEERRKWLSVSKVMDRIRNDGVFYEIAYAESLMP 235

Query: 723 STARKNIISNAHV 761
           +T RKN + N  V
Sbjct: 236 AT-RKNTLFNGRV 247


>U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical
           protein C05D9.3 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 318 AINTCLEEGSDEPXXXXXXGDTREIKDFVPPPMDLPKDNNFQTKLNILQRITIE-FSDSG 494
           A N C++ G+  P          E  +    P D+P D++ + +L+       E  S SG
Sbjct: 346 ASNNCVDNGTPAPEEKDKPESVPEEPEATEKPDDMPSDSDLEKELDESSSAKEEQTSSSG 405

Query: 495 IVHKL 509
           +V ++
Sbjct: 406 VVSRV 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,802,866
Number of Sequences: 27780
Number of extensions: 333138
Number of successful extensions: 705
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)