Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i11
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    29   0.32 
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.9  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   9.1  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.1  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    25   9.1  
SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomy...    25   9.1  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 287 EKLNELNSAI*TKLQQDIGCQLRLGNGTRGHCTSNQKR 400
           EK +E  + I   + QDI  +L    G R H TSN KR
Sbjct: 135 EKEDEFMAEILGSIDQDIPERLSTKKGNRSHTTSNAKR 172


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 28  YCAQFNIYSICVIGKS 75
           YC +  IY+IC IG S
Sbjct: 237 YCTEHLIYAICAIGAS 252


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 72  ILICFSDRENHSNLSN 119
           +L+CF D  NH  ++N
Sbjct: 247 VLVCFWDESNHQEIAN 262


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 382 AMATRPVAEAQLTTNILLQFSSYS*V*LIEFLALSSQWVAFPIRW*ILRSTAFARASFSN 203
           A  ++P+    L TN LL   S     LIEFL      +   + W +L+     ++  S+
Sbjct: 60  ARYSKPLGLFVLDTNFLLSHLSLC-QNLIEFLTARCPRLVVVLPWTVLQELDGLKSESSS 118

Query: 202 TC 197
           TC
Sbjct: 119 TC 120


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 202 CC*NWP*QKQCFAEST 249
           CC N+  +KQCFA +T
Sbjct: 86  CCQNYYSKKQCFANTT 101


>SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 67

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 348 SCASATGRVAIAPQTRNEVKT 410
           S  S T R A+ P+ +NEVKT
Sbjct: 16  SICSQTVRQALKPEIKNEVKT 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,517
Number of Sequences: 5004
Number of extensions: 33446
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)