Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30i10
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical pr... 30 1.9
U97193-13|AAO38676.1| 215|Caenorhabditis elegans Hypothetical p... 29 3.4
U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical p... 29 3.4
Z93397-7|CAB07722.2| 483|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z93372-6|CAB07549.2| 483|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical ... 29 4.5
Z82056-5|CAB04856.1| 378|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81129-9|CAB03410.1| 378|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL034393-10|CAA22323.1| 228|Caenorhabditis elegans Hypothetical... 28 5.9
AL023835-12|CAA19484.1| 412|Caenorhabditis elegans Hypothetical... 28 7.8
>U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical
protein C34D10.2 protein.
Length = 675
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +2
Query: 359 HGRRPRSHLCVGEDAHQSKHAARNDNSGSTRQSAFGYCGPR-SFDEVPEEPAASDPYHDL 535
HG PR+ C HA RN GST+ S C P + +P E S P +
Sbjct: 289 HGYCPRAVFCAFAHHDSELHAHRNPYVGSTQPSPKEQCSPSPNGFSIPTERFES-PINGF 347
Query: 536 LVPVALLC*LRQEALLSEIQYAIFGAVANRVARPRQQERSPRHGEGE 676
+ + L+ +++ YA ++++ + ERSP G E
Sbjct: 348 SPSYSSV--LKNRIPIAKQGYATTDSISSSYPKAPGYERSPIVGSFE 392
>U97193-13|AAO38676.1| 215|Caenorhabditis elegans Hypothetical
protein C06A5.8b protein.
Length = 215
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -2
Query: 346 SSSLYRNRAAALAKTTVGPTPHTSPLQLNHFAIVSK*ESQISQCAEK 206
SSSL R L++ HT LQ++H AI +K E++ + C EK
Sbjct: 164 SSSLVRGFQIGLSRLFRNRRIHTEHLQVDHGAIATKLETR-AACTEK 209
>U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical
protein C06A5.8a protein.
Length = 283
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -2
Query: 346 SSSLYRNRAAALAKTTVGPTPHTSPLQLNHFAIVSK*ESQISQCAEK 206
SSSL R L++ HT LQ++H AI +K E++ + C EK
Sbjct: 232 SSSLVRGFQIGLSRLFRNRRIHTEHLQVDHGAIATKLETR-AACTEK 277
>Z93397-7|CAB07722.2| 483|Caenorhabditis elegans Hypothetical
protein ZC482.5 protein.
Length = 483
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +3
Query: 426 EMTTAGLLGSQHSDIVVLGPLTKFLKNQQPQIHITICWFLSLCYAD 563
+M TAGL+G++ D + + LT ++ ++ ++ + W+ LC+ D
Sbjct: 365 QMFTAGLMGARRRDTIQVDDLT--VEKEEARLK-AVPWWKKLCFKD 407
>Z93372-6|CAB07549.2| 483|Caenorhabditis elegans Hypothetical
protein ZC482.5 protein.
Length = 483
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +3
Query: 426 EMTTAGLLGSQHSDIVVLGPLTKFLKNQQPQIHITICWFLSLCYAD 563
+M TAGL+G++ D + + LT ++ ++ ++ + W+ LC+ D
Sbjct: 365 QMFTAGLMGARRRDTIQVDDLT--VEKEEARLK-AVPWWKKLCFKD 407
>AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical
protein F52G3.3 protein.
Length = 807
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 422 ARNDNSGSTRQSAFGYCGPRSFDEV 496
ARN + +TR A CGP SFDE+
Sbjct: 147 ARNLQAIATRLLAMNMCGPTSFDEL 171
>Z82056-5|CAB04856.1| 378|Caenorhabditis elegans Hypothetical
protein T26H5.5 protein.
Length = 378
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 420 LLEMTTAGLLGSQHSDIVV--LGPLTKFLKNQQPQIHITICWFLSLCYADYVRKHY 581
L+++ + +GS+ +++V + L + IH +C+FLS Y D VR+ +
Sbjct: 296 LVKVIVSEAIGSEGMNLIVDRIASLFPLIITINGAIHFFLCYFLSSQYRDAVREMF 351
>Z81129-9|CAB03410.1| 378|Caenorhabditis elegans Hypothetical
protein T26H5.5 protein.
Length = 378
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 420 LLEMTTAGLLGSQHSDIVV--LGPLTKFLKNQQPQIHITICWFLSLCYADYVRKHY 581
L+++ + +GS+ +++V + L + IH +C+FLS Y D VR+ +
Sbjct: 296 LVKVIVSEAIGSEGMNLIVDRIASLFPLIITINGAIHFFLCYFLSSQYRDAVREMF 351
>AL034393-10|CAA22323.1| 228|Caenorhabditis elegans Hypothetical
protein Y18D10A.12 protein.
Length = 228
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 284 GGRAHGGLRECRGPVSVQRARGDYIHGRRPRS 379
GGR+ GG + S + DY HGR P S
Sbjct: 20 GGRSRGGYKSYSSFSSSSSSEEDYHHGRPPHS 51
>AL023835-12|CAA19484.1| 412|Caenorhabditis elegans Hypothetical
protein Y37A1B.13 protein.
Length = 412
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 594 NMPYLEQWQIELQDRASRSAHRAMEKVNSF 683
N Y+E +++EL+D+ RSA R + F
Sbjct: 203 NKKYIEDYKLELKDQLIRSARRCQRSIFIF 232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,071
Number of Sequences: 27780
Number of extensions: 353355
Number of successful extensions: 971
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -