Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i08
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    41   2e-04
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    34   0.023
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   3.5  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   4.7  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +2

Query: 473 QRVYLR--SCNIGQIHDRAFKGLTNLVELDLSQNLLTQIPSNSFKDAPFLRDLTLAQNPI 646
           Q +YLR  SC +  I    F  L +LV LDLS N LT+IP  +  + P L  L LA N I
Sbjct: 333 QLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIP-YALGELPQLCSLNLASNKI 391

Query: 647 LKVHSDALTNLGSVIKLDLSR 709
               +    +L  +  L LSR
Sbjct: 392 TGCRTFYHISLSHLQILVLSR 412


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 24/80 (30%), Positives = 40/80 (50%)
 Frame = +2

Query: 407  LSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTNLVELDLSQNLLTQIP 586
            LSGN +  L  + F    +  ++ +YL    +G     A +    L  L+LS N LT+IP
Sbjct: 790  LSGNPVSSLSSQEFV---MPTVEELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIP 846

Query: 587  SNSFKDAPFLRDLTLAQNPI 646
            S  F++   L+ L ++ N +
Sbjct: 847  SKFFQNFSDLKHLFVSGNEL 866



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 26/93 (27%), Positives = 46/93 (49%)
 Frame = +2

Query: 362 ITVPEPVDPATQVLDLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTN 541
           +T P  +   +Q+  L+ ++  +L Q +     LV L+ +YL+  ++     +    L N
Sbjct: 538 VTFPLIITELSQLETLNFSH-NLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKN 596

Query: 542 LVELDLSQNLLTQIPSNSFKDAPFLRDLTLAQN 640
           L  +DLS N +T I S S  + P L  + +A N
Sbjct: 597 LETIDLSYNAITNIASLS--ECPKLNSINVACN 627



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +2

Query: 401 LDLSGNNLQILPQEAFARTGL--VNLQRVYLRSCNIGQIHDRAFKGLTNLVEL--DLSQN 568
           LDL  NN++I P+E +  + L  VNL    L    +     +      + +++   LS N
Sbjct: 734 LDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKIKLPVATSKKLTRTISQLKIMRTLSGN 793

Query: 569 LLTQIPSNSFKDAPFLRDLTLAQN 640
            ++ + S  F   P + +L L  N
Sbjct: 794 PVSSLSSQEFV-MPTVEELYLVDN 816


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 236  TISVMLSKTILAGVAPPGSCPAVCACKWKGGKQTVE 343
            T +  + KT L    PP  C  VC C ++  KQ+ E
Sbjct: 1218 TATFTMDKTPLK-FEPPDGCCPVCFCPYEKSKQSTE 1252


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 395 QVLDLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTNLVELDLSQNLL 574
           Q L L+ NNL +   + +A      +  + L S ++  + +     L  L  LD+S+N +
Sbjct: 244 QTLSLA-NNLNLYSADGYAVDVFQGINNLNLSSTSLADVAELPVHTLHKLTFLDISENNI 302

Query: 575 TQIPS 589
             I S
Sbjct: 303 RDIRS 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,901
Number of Sequences: 5004
Number of extensions: 62501
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)