Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30i08
(715 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 54 1e-09
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 26 0.31
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.0
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 5.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 8.8
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 54.0 bits (124), Expect = 1e-09
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Frame = +2
Query: 356 ALITVPEPVDPATQVL---DLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAF 526
+L ++PE + +T+ L L+ N L+ LP+ F R + + + ++ + F
Sbjct: 272 SLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTF 331
Query: 527 KGLTNLVELDLSQNLLTQIPSNSFKDAPFLRDLTLAQNPILKVHSDALTNLGSVIKLDLS 706
GL L+ L+LS N+LT I + FKD FL+ L L N I ++ S+A L ++ L+LS
Sbjct: 332 LGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELS 391
Score = 52.4 bits (120), Expect = 4e-09
Identities = 35/101 (34%), Positives = 53/101 (52%)
Frame = +2
Query: 401 LDLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTNLVELDLSQNLLTQ 580
L+LS N L+ + + F GL L R+ L I I AF+ ++L ELDLS N LT
Sbjct: 388 LELSDNKLRTVGAQLF--NGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTS 445
Query: 581 IPSNSFKDAPFLRDLTLAQNPILKVHSDALTNLGSVIKLDL 703
+P ++ +D L+ L L +N I ++ + NL + L L
Sbjct: 446 VP-DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRL 485
Score = 46.4 bits (105), Expect = 3e-07
Identities = 37/103 (35%), Positives = 50/103 (48%)
Frame = +2
Query: 398 VLDLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTNLVELDLSQNLLT 577
VL+LS N L + F L LQ + LR+ +I +I AF L NL L+LS N L
Sbjct: 339 VLNLSYNMLTHIDARMFK--DLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLR 396
Query: 578 QIPSNSFKDAPFLRDLTLAQNPILKVHSDALTNLGSVIKLDLS 706
+ + F L LTL+ N I + A N + +LDLS
Sbjct: 397 TVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLS 439
Score = 39.5 bits (88), Expect = 3e-05
Identities = 33/103 (32%), Positives = 47/103 (45%)
Frame = +2
Query: 398 VLDLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTNLVELDLSQNLLT 577
VL+L+GN L + GL+ L + L + I R FK L L LDL N +
Sbjct: 313 VLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSID 372
Query: 578 QIPSNSFKDAPFLRDLTLAQNPILKVHSDALTNLGSVIKLDLS 706
+I SN+F L L L+ N + V + L + +L LS
Sbjct: 373 RIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLS 415
Score = 35.1 bits (77), Expect = 7e-04
Identities = 28/103 (27%), Positives = 52/103 (50%)
Frame = +2
Query: 395 QVLDLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTNLVELDLSQNLL 574
+VL ++G+ ++ + F GL NLQ ++L I ++ F+ L++L EL L NL+
Sbjct: 821 RVLYVNGSGIESIQNRTF--NGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLI 878
Query: 575 TQIPSNSFKDAPFLRDLTLAQNPILKVHSDALTNLGSVIKLDL 703
I + +F L L L+ N ++ +T +++L L
Sbjct: 879 GFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSL 921
Score = 33.9 bits (74), Expect = 0.002
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Frame = +2
Query: 335 TVECVDRALITVPEPVDPATQVLD---LSGNNLQILPQEAFARTGLVNLQRVYLRSCNIG 505
T+E D L TV + VL+ LSGN + + AF +L+ + L +
Sbjct: 387 TLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCS--DLKELDLSGNELT 444
Query: 506 QIHDRAFKGLTNLVELDLSQNLLTQIPSNSFKDAPFLRDLTLAQNPILKVHSDALTNLGS 685
+ D A + L L LDL +N ++ + SF++ L L L N I + L +L +
Sbjct: 445 SVPD-ALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPN 503
Query: 686 VIKLDLSR 709
+ L+L+R
Sbjct: 504 LQILNLAR 511
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 26.2 bits (55), Expect = 0.31
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 576 HRFHQTVSKMHLFYETSPWLKIRY*KFI 659
H HQT S HL Y P L Y ++
Sbjct: 353 HHHHQTQSLQHLHYRQPPTLSESYSSYV 380
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 250 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 161
H+ C Y PP ++K K + F F H
Sbjct: 95 HNGSCLYVPPGIFKSTCKIDITWFPFDDQH 124
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 5.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 250 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 161
H+ C Y PP ++K K + F F H
Sbjct: 163 HNGSCLYVPPGIFKSTCKIDITWFPFDDQH 192
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 5.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 250 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 161
H+ C Y PP ++K K + F F H
Sbjct: 163 HNGSCLYVPPGIFKSTCKIDITWFPFDDQH 192
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 5.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 465 TSPVLAKASCGNIWRLFPERSSTC 394
T P + K+SC R FP TC
Sbjct: 136 TPPAIFKSSCEIDVRYFPFDQQTC 159
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 250 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 161
H C Y PP ++K K + F F H
Sbjct: 95 HDGSCLYVPPGIFKSTCKMDVAWFPFDDQH 124
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 250 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 161
H C Y PP ++K K + F F H
Sbjct: 95 HDGSCLYVPPGIFKSTCKMDIAWFPFDDQH 124
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 250 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 161
H C Y PP ++K K + F F H
Sbjct: 95 HDGSCLYVPPGIFKSTCKIDIAWFPFDDQH 124
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 250 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 161
H C Y PP ++K K + F F H
Sbjct: 95 HDGSCLYVPPGIFKSTCKIDITWFPFDDQH 124
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 348 THSTVCLPPFHLHAQTAGHEPGGAT 274
THS +C P H + +G G+T
Sbjct: 377 THSQLCPTPRSTHLKVSGINRVGST 401
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,571
Number of Sequences: 438
Number of extensions: 4416
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -