Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30i07
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743... 35 0.055
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 32 0.39
01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136 32 0.51
07_01_0125 - 944207-945778 29 2.7
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 28 6.3
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644... 28 6.3
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267... 28 8.3
05_01_0515 + 4343067-4344206,4344293-4344478,4344884-4345018,434... 28 8.3
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281... 28 8.3
>02_05_0856 -
32272757-32273494,32273578-32273866,32273961-32274312,
32275232-32275850
Length = 665
Score = 35.1 bits (77), Expect = 0.055
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 533 ASIHSREWISTAVVTYIADYIARNFHSLPTSITN--KDWHIVPILNPDGYEYTHTHD 697
A I E + T T + YI NF PT ITN + W++ I + D YE+ H +D
Sbjct: 291 AGIDPDEIVDTRSYTNLLSYITSNFQGNPT-ITNLPRKWNVCVIGSHDLYEHPHIND 346
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 536 SIHSREWISTAVVTYIADYIARNFHSLPTS---ITNKDWHIVPILNPDGY 676
++H E + V+ +A+++ N+ P + + N HI+P +NPDG+
Sbjct: 182 NVHGDEPVGREVLIKLANWLCDNYLKDPLATLIVKNMHLHILPTMNPDGF 231
>01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136
Length = 505
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 533 ASIHSREWISTAVVT-YIADYIARNFHSLPTSITN--KDWHIVPILNPDGYEYTHTHD 697
A I E + T T ++ YI NF PT ITN + W++ I + D YE+ H +D
Sbjct: 99 AGIDPDEIVDTRSYTNLLSSYITSNFQGNPT-ITNLPRKWNVCVIGSHDLYEHPHIND 155
>07_01_0125 - 944207-945778
Length = 523
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +2
Query: 290 VIPRGLKQIVPTNKPKKRKVKLMNWKKYHRLNVIYAFIDELERDYPAICTVSV-IGQSVE 466
+I ++I + ++K ++ + Y + AF +DYP + +VS+ +
Sbjct: 311 IITSRSEKIAKLGTTQPLRLKFLSREAYWYFFKVLAFGSSDPKDYPEVASVSMAMFNGYF 370
Query: 467 GRDIKMLKISNS-DARNSAIWLDASIHSREWIS 562
R++ I D N A ++ ASI++ +W+S
Sbjct: 371 DREMYNTFIGPFIDLNNMATFIQASIYNGDWLS 403
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 274 FLSELSLSTVFSPYSGIGFQIYIVFGNT 191
F+S+ SL+ + SP G GF I+ +FG T
Sbjct: 389 FISKTSLTCLLSP--GCGFNIFRIFGRT 414
>01_06_0959 -
33362810-33363125,33363309-33363475,33363583-33364410,
33364483-33364719,33365455-33365871,33365951-33366412,
33367197-33367382
Length = 870
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 458 SVEGRDIKMLKISNSDARNSAIWLDASIHSREWISTAVVTYIADYIARNFHSLPTSITNK 637
SV G + + +S RN L ++H +T V + I+ IA FH+ ++ N
Sbjct: 511 SVTGPPVTLSVVSR--IRNGGNLLKGAVHGAAAFATGVSSPISGAIASTFHNCKGAVKNS 568
Query: 638 D 640
D
Sbjct: 569 D 569
>11_06_0023 -
19325966-19326046,19326132-19326248,19326635-19326703,
19326922-19327119,19327388-19327591,19327688-19327828,
19328416-19328625,19329330-19329944
Length = 544
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -2
Query: 225 LDSKSTSCSEIPLVFRKTFDNFVALVVEIVFIVEDVSRLCIRSSFFDSTLD 73
+D S E+P R+ F+N + +++F+ D + + FFDSTL+
Sbjct: 354 IDEIQNSMPELPEAKRRRFENMGLSMQDVLFLANDDN----VARFFDSTLE 400
>05_01_0515 +
4343067-4344206,4344293-4344478,4344884-4345018,
4346652-4346753,4346973-4347068,4347146-4347238,
4347351-4347470,4347580-4347612,4347699-4347749,
4347874-4347952,4348398-4348456
Length = 697
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 293 IPRGLKQIVPTNKPKKRKVKLMNWKKYH 376
+ +G +Q P K K+ +V+ + W+ YH
Sbjct: 470 VEKGKEQEKPVEKGKEEEVEFLEWEHYH 497
>04_01_0223 +
2813129-2814014,2815928-2816309,2816358-2816459,
2816727-2817249
Length = 630
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 338 KRKVKLMNWKKYHRLNVIYAFID 406
K V+L+ W+K H + ++Y F+D
Sbjct: 415 KNLVELVGWEKAHTIFLVYEFVD 437
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,952,514
Number of Sequences: 37544
Number of extensions: 327873
Number of successful extensions: 822
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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