Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i05
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    56   5e-09
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    36   0.005
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    29   0.72 
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   6.7  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    26   6.7  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   8.8  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 25/51 (49%), Positives = 35/51 (68%)
 Frame = +3

Query: 591 NYEVLRIFQELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVIN 743
           N  V  I  E+A P    P+ G+++ N+EL  LCSSK++PGPPSD AQV++
Sbjct: 68  NVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVS 118



 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 23/60 (38%), Positives = 36/60 (60%)
 Frame = +1

Query: 142 VYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIK 321
           ++K I P ++ +  ++   R DGR+  E R I +N N I TA+ SA+++ G    VCGIK
Sbjct: 16  IFKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIK 75


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 163 VKHFNDYISIK-TRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVC 312
           + HF + +S++  R DGR +DE RN +  +    + + SA ++ GNT V+C
Sbjct: 1   MSHF-EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLC 50


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 157 HPVKHFN---DYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGN 297
           HPV  ++   +Y++ + R     F EH+N+K+ V S      SA  K  N
Sbjct: 529 HPVILYDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLEN 578


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 97  KCIFKFISHTFKMSEVYKLIHP---VKHFNDYISIKTRLDGRN 216
           KC+F FI+H+  +  +Y   HP   V +  D   + TR D RN
Sbjct: 249 KCLFSFIAHSDSVWALYS-EHPDLKVFYAGDRSGLITRTDIRN 290


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 384 NCALKCVKGCDNAGLI 431
           NC LKC+  C   GL+
Sbjct: 25  NCLLKCISECSERGLV 40


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 425 TSIVTSLHTLQSTIYLVVYAMMTSTLKRKMLRAISFIPHTTV-VLPHLTTADASAVFMEL 249
           T ++    +  +  + ++Y+  TST        +S +PH+T+  L  ++  D SA   + 
Sbjct: 146 TELIIPTTSYNNQSHTLIYSTYTSTYLPNSTIDLSILPHSTISTLSTVSINDTSASLSKT 205

Query: 248 T 246
           T
Sbjct: 206 T 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,178
Number of Sequences: 5004
Number of extensions: 43521
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)