Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i05
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809...    38   0.009
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    30   2.3  
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981...    29   3.0  
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479...    29   4.0  

>11_03_0222 +
           11880333-11880551,11880667-11880736,11880839-11880944,
           11881490-11881556,11881597-11881692
          Length = 185

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 618 ELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVIN 743
           E+  P  E PD G +     +P +CS   RPG P++ A VI+
Sbjct: 82  EVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVIS 123



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 139 EVYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGI 318
           E Y+ + P+     ++    R D R   E R   + + ++ +A  SA+V+ G+T ++  I
Sbjct: 20  EAYRRLFPLAFLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASI 79

Query: 319 KL 324
           KL
Sbjct: 80  KL 81


>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 645 PDLGFLITNVELPALCSSKYRPGPPSDYAQ 734
           P + F +T+  L A  +   RPGPPS  AQ
Sbjct: 4   PTVPFFLTSTTLAAAAAKPQRPGPPSPPAQ 33


>01_03_0149 +
           13194866-13195012,13196576-13196828,13197810-13198173,
           13198283-13198501,13199888-13200002,13200697-13200948,
           13201149-13201442
          Length = 547

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 198 SFDRNIIVEMFYWMY*FIYFGHFKSMR 118
           SF R+ IVEM++WM   +Y  H+   R
Sbjct: 267 SFSRDRIVEMYFWMNGALYEPHYSHSR 293


>02_04_0625 -
           24547435-24547569,24547674-24547742,24547871-24547997,
           24548086-24548209,24548714-24548832,24548953-24549044,
           24549124-24549329,24549429-24549534,24549636-24549740,
           24549836-24549942,24550030-24550253,24550341-24550468,
           24550945-24551022,24551338-24552012,24552655-24552798,
           24552985-24553064,24553958-24554029,24554124-24554343,
           24554460-24554590,24555118-24555243,24555567-24555695,
           24556156-24556318,24556408-24556545,24557198-24557317,
           24557521-24557682,24557751-24557876,24558172-24558342,
           24558435-24558590,24559061-24559408
          Length = 1526

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 199 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKL 324
           R+DGR  DE R +    ++      SA+   G+T V+C + L
Sbjct: 373 RVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTL 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,723
Number of Sequences: 37544
Number of extensions: 227683
Number of successful extensions: 501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)