Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i05
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC024877-11|AAF60897.2|  621|Caenorhabditis elegans Hypothetical...    29   4.7  
AC024877-10|ABA00174.1|  613|Caenorhabditis elegans Hypothetical...    29   4.7  
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    28   8.2  

>Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical
           protein B0564.1a protein.
          Length = 240

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 199 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGI 318
           R+DGR   + RNI   +   + A+ S  ++ GNT V+C +
Sbjct: 10  RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV 49


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical protein
            F07A11.4 protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 178  DYISIKTRLDGRNFDEHRNIKLNVNSIKTADA 273
            D+ S KT+++ RNFD+    + + ++++T DA
Sbjct: 1031 DFDSSKTKIEWRNFDDSTVARQSTSTLQTEDA 1062


>AC024877-11|AAF60897.2|  621|Caenorhabditis elegans Hypothetical
           protein Y95B8A.12a protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 462 KEKEGRKQTCSHNDCNNE 515
           KEKE +K+ CS + CNN+
Sbjct: 601 KEKEEKKECCSSSTCNNQ 618


>AC024877-10|ABA00174.1|  613|Caenorhabditis elegans Hypothetical
           protein Y95B8A.12b protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 462 KEKEGRKQTCSHNDCNNE 515
           KEKE +K+ CS + CNN+
Sbjct: 593 KEKEEKKECCSSSTCNNQ 610


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 405 SHTSEHNLSCCLCNDDFNFKEKNVESYQ 322
           S   E    C +C +DFNFK    + Y+
Sbjct: 479 SEEKESKYPCAICEEDFNFKGVREQHYK 506


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 405 SHTSEHNLSCCLCNDDFNFKEKNVESYQ 322
           S   E    C +C +DFNFK    + Y+
Sbjct: 479 SEEKESKYPCAICEEDFNFKGVREQHYK 506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,338,903
Number of Sequences: 27780
Number of extensions: 246931
Number of successful extensions: 656
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)