Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30i02
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    33   0.24 
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855...    32   0.43 
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248...    31   0.98 
05_03_0611 + 16171038-16171124,16171419-16171505,16173692-161737...    29   3.0  
02_05_0463 - 29248675-29249391,29250024-29250142,29250276-292504...    28   9.2  

>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
 Frame = +2

Query: 335 LTIGSHIICTGTP----SEDIPWFAINI-GSEELEAGRSDISVHFNVR-----QPQCYVV 484
           L +GSH+   G+P    +  +  FA+ + G  + +   +   +HFN R       +  + 
Sbjct: 154 LGLGSHVTVVGSPRRVAANAVAQFAVEVRGGGDGDGDEAARILHFNPRLRGDWSGRPVIE 213

Query: 485 RNTRRRGKWGP 517
           +NTR RG+WGP
Sbjct: 214 QNTRFRGQWGP 224


>03_02_0445 -
           8551912-8552047,8552729-8552896,8553785-8554068,
           8554143-8555386,8556901-8556967,8557059-8557150,
           8557269-8557480,8558541-8558623,8559092-8559122,
           8559770-8559951,8560557-8560616,8561092-8561289,
           8561485-8561539,8562740-8562855,8563012-8563176,
           8563310-8563483,8564134-8564333,8564778-8564882,
           8565063-8565126,8566452-8566718
          Length = 1300

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 158 FAKKIMKCLNCVSKMDYDVVEGKIPRDLLEYDF 256
           F  ++ KCL+C S +D D V   +PR ++ +DF
Sbjct: 689 FLGRLNKCLSCPSLLDLDAVHSTVPR-IMPWDF 720


>01_02_0091 - 11023912-11024017,11024112-11024185,11024478-11024834,
            11024938-11025166,11025468-11025559,11026099-11026326,
            11027108-11027356,11027429-11027471,11027589-11027836,
            11027922-11028035,11028122-11028322,11028417-11028593,
            11028725-11028853,11029210-11029287,11029369-11029464,
            11029563-11029634,11031549-11031677,11032105-11032220,
            11033048-11033204,11033343-11033426,11033513-11033574,
            11034901-11035067,11035162-11035226,11035315-11035371,
            11035547-11035633,11036638-11036703,11036810-11036908
          Length = 1193

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 239  LLEYDFAEDAMDFECQLAESQDVNFTQTLSEPLTIGSHIICTGTPSEDI 385
            L EY F   A+  +    ES++V F  T      +GS  + TG P E +
Sbjct: 907  LKEYKFTPSAVAIDLNSGESREVEFRATRVAYSAMGSVTLLTGQPKEGV 955


>05_03_0611 +
           16171038-16171124,16171419-16171505,16173692-16173746,
           16174277-16174647
          Length = 199

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 167 KIMKCLNCVSKMDYDVVEGKIPRDLLEYDFAEDAMDFECQLAESQDVNF 313
           K+ K L  + K +YD+  G  PRD   Y+F E+       +  + DV +
Sbjct: 78  KMQKALPDLLK-EYDMPAGLFPRDATNYEFNEETKKLTVYIPSACDVGY 125


>02_05_0463 -
           29248675-29249391,29250024-29250142,29250276-29250495,
           29250621-29250739,29251013-29251093,29251751-29251802,
           29252392-29252514
          Length = 476

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +2

Query: 515 PEETTAYRLYPFKVNKQFTIEIVVDETETLWAVDGDHYCSYVHRNPSPFTARWIEVTGIR 694
           P +T      PF  ++ FT+        T   V   H+  + + +P  F A W++ + IR
Sbjct: 333 PSKTKDIDYLPFFYSRVFTLSWQFYGNNTGEVV---HFGDFTNSSPR-FGAYWVDKSRIR 388

Query: 695 DAFLKISKTDNYPTLA 742
            AFL+    + Y  ++
Sbjct: 389 GAFLEGGSREEYEAIS 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,402,775
Number of Sequences: 37544
Number of extensions: 367907
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)