Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30h24
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 3.3
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 27 3.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 5.7
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 26 5.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 5.7
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 7.5
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 7.5
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 25 7.5
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 25 7.5
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||... 25 9.9
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 513 GKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREE 641
G+ + G ADG+R + K + D +S S++REE
Sbjct: 1542 GRSNGSNRGNDSRDADGRRSTHYASNKRPRSSDSQSPSNLREE 1584
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 522 EEDSSGQRKGGADGQRQRRTGNKKGYT--AEDRKSVSSVREEKNG 650
+ +S ++K G R R+T + +GYT E ++S V+E+ G
Sbjct: 12 KSESEDEQKNGRVKVRSRKTDDNEGYTWEGEYQRSWDIVQEDAEG 56
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 544 ERAELMAKDNAEQEIRRDILQKIVNLFHLFEKRKMDFENKKQ 669
E AE + K+NAEQ +R L L L EK K E +Q
Sbjct: 459 EMAENIKKENAEQLNKRRCLLGASGLEKLAEKLKKSKEKNEQ 500
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 103 NHQRAASKTIIRWVVMIGPVVLQYN*DFDSKSQYWWR 213
N R + TI V+ +GP+V F +KS WR
Sbjct: 258 NRYRGTAITIFAAVIFVGPLVAPIVGGFLTKSYLGWR 294
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 624 KQIYDLLQYIPSYFLFGVVFGHQLRPFFGQSY 529
K I D L + + VF +RPFFG SY
Sbjct: 533 KPILDSLLGVFGFLADSKVFLESIRPFFGTSY 564
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 525 EDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKNGLRKQK 665
ED+S + D ++ KK T ++ + + +KN +KQK
Sbjct: 163 EDNSASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKKNNTKKQK 209
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 520 EKRIALAKERAELMAKDNAEQEIRRDILQKIVNLFHLFEK 639
E+ ++ + RAE++ K E ++I K ++ FHL +K
Sbjct: 67 EQSLSFQQRRAEMLEKSLRELRKDKNISVKDLDEFHLLDK 106
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 7.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 177 IILQDDWPDHHDPAYD 130
+++Q+DW D+ D YD
Sbjct: 96 VLIQEDWVDYKDTMYD 111
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 568 DNAEQEIRRDILQKIVNL 621
DN ++EI+R + QKI NL
Sbjct: 136 DNVDEEIKRRVTQKINNL 153
>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 507 GGGKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKN 647
GGG +++S A+G R ++ G+ GY E + ++K+
Sbjct: 26 GGGNKYDEASELFLDAANGYRLQKQGSAAGYAFEKAAEMQLKTDDKD 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,423
Number of Sequences: 5004
Number of extensions: 31149
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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