Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30h24
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81587-10|CAH10780.1| 483|Caenorhabditis elegans Hypothetical p... 33 0.18
Z81587-9|CAB04708.2| 511|Caenorhabditis elegans Hypothetical pr... 33 0.18
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 33 0.18
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 33 0.18
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 33 0.18
Z75543-7|CAA99868.2| 139|Caenorhabditis elegans Hypothetical pr... 32 0.43
AF003385-2|AAB54249.1| 773|Caenorhabditis elegans Hypothetical ... 31 0.75
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p... 30 1.3
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 1.7
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 29 2.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 2.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 2.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 2.3
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 28 5.3
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 28 5.3
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z68114-8|CAA92162.1| 317|Caenorhabditis elegans Hypothetical pr... 28 6.9
>Z81587-10|CAH10780.1| 483|Caenorhabditis elegans Hypothetical
protein T06G6.3b protein.
Length = 483
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 523 KRIALAKERAELMAKDNAEQEIRRDILQKIVNLFHLFE 636
+ I KER E MA + EQE ++D+ ++ VN F L E
Sbjct: 153 REIEKLKERIEKMAAEEPEQEAKKDVCKRNVNHFKLDE 190
>Z81587-9|CAB04708.2| 511|Caenorhabditis elegans Hypothetical
protein T06G6.3a protein.
Length = 511
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 523 KRIALAKERAELMAKDNAEQEIRRDILQKIVNLFHLFE 636
+ I KER E MA + EQE ++D+ ++ VN F L E
Sbjct: 181 REIEKLKERIEKMAAEEPEQEAKKDVCKRNVNHFKLDE 218
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 477 IPAFEKTSNPGGGKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKN 647
+PA E + GGG+ + SSG G DG+ R GN+ +T + K R EKN
Sbjct: 1009 VPAAEDIESRGGGEIDIPSSGDVIHGRDGRDGRDAGNRGTHTITNTKE-RIERIEKN 1064
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 477 IPAFEKTSNPGGGKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKN 647
+PA E + GGG+ + SSG G DG+ R GN+ +T + K R EKN
Sbjct: 1082 VPAAEDIESRGGGEIDIPSSGDVIHGRDGRDGRDAGNRGTHTITNTKE-RIERIEKN 1137
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 477 IPAFEKTSNPGGGKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKN 647
+PA E + GGG+ + SSG G DG+ R GN+ +T + K R EKN
Sbjct: 1082 VPAAEDIESRGGGEIDIPSSGDVIHGRDGRDGRDAGNRGTHTITNTKE-RIERIEKN 1137
>Z75543-7|CAA99868.2| 139|Caenorhabditis elegans Hypothetical
protein K01D12.8 protein.
Length = 139
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 507 GGGKGEEDSSGQRKGGADGQRQRRTGNK--KGYTAED 611
GGGKG + SG GG+ G+R +R+ K K Y ED
Sbjct: 71 GGGKGGKGGSGGGGGGSGGKRYKRSKKKDTKCYEYED 107
>AF003385-2|AAB54249.1| 773|Caenorhabditis elegans Hypothetical
protein R08F11.7 protein.
Length = 773
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 507 GGGKGEEDSSGQRKGGADGQRQRRTGNKKG 596
GGG G G R G DG+++R +G ++G
Sbjct: 146 GGGGGGRGGDGGRSGEQDGRKKRNSGEQQG 175
>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
protein C28H8.3 protein.
Length = 1714
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 528 DSSGQRKGGADGQRQRR--TGNKKGYTAEDRKSVSSVREEKNGLRK-QKAA 671
D KGG GQ+Q++ G KKG T E KS + E N K QK A
Sbjct: 582 DEKKTGKGGWSGQKQQKPGAGGKKGATKESGKSKKDLILEANKKAKDQKVA 632
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 498 SNPGGGKGEEDSS-GQRKGGADGQRQRRTGNKK 593
S+ GGG GE+D+ G+R+GG G + R+ +++
Sbjct: 45 SSTGGGGGEDDNDRGERRGGGGGGDRDRSRSRE 77
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 477 IPAFEKTSNPGG-GKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKNG 650
IPA GG G G S G GGA G R + G +A + KSV ++ G
Sbjct: 456 IPAGGGGGGSGGYGAGGGGSGGYGAGGAGGARNSASNGSYGSSANEVKSVGFGAQQYGG 514
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 498 SNPGGGKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKNGLRKQK 665
+N GG G + GG +GQ + TGN G+ + S ++ G +Q+
Sbjct: 164 NNQQGGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGNQGVTASGFGGQQQGFGQQQ 219
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 498 SNPGGGKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKNGLRKQK 665
+N GG G + GG +GQ + TGN G+ + S ++ G +Q+
Sbjct: 185 NNQQGGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGNQGVTASGFGGQQQGFGQQQ 240
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 498 SNPGGGKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKNGLRKQK 665
+N GG G + GG +GQ + TGN G+ + S ++ G +Q+
Sbjct: 170 NNQQGGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGNQGVTASGFGGQQQGFGQQQ 225
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 507 GGGKGEEDSSGQRKGGADGQ-RQRRTGNKK 593
G GKG D G R G DG R + GN K
Sbjct: 477 GKGKGSGDGDGNRNGNGDGNGRPKGDGNIK 506
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 507 GGGKGEEDSSGQRKGGADGQ-RQRRTGNKK 593
G GKG D G R G DG R + GN K
Sbjct: 477 GKGKGSGDGDGNRNGNGDGNGRPKGDGNIK 506
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +3
Query: 513 GKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKNGLRKQKA 668
G D S + ++ ++ KK ++D+K +S + +KN K K+
Sbjct: 196 GPASSDQSSSAPASTESKKSKKIKKKKNKKSKDKKKSNSRKNKKNKKSKGKS 247
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 486 FEKTSNPGGGKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKSVSSVREEKNG 650
F+KT+N GGG +++ + R N G + S S ++G
Sbjct: 479 FKKTANGGGGNNNNNNNNNNRNNGPPPRNNGNNNGNGRPMKPPSSSGSGSNRRSG 533
>Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical
protein F46B6.7 protein.
Length = 614
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 489 EKTSNPGGGKGEEDSSGQRKGGADGQRQRRTGNKKGYTAEDRKS--VSSVREEKN 647
E ++ ++++ + GG+ RQRR N KG + R +SV KN
Sbjct: 17 ENVASSPNANPKKNADTESSGGSKNNRQRRRSNTKGDGSNSRNGSRTNSVSNSKN 71
>Z68114-8|CAA92162.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.11 protein.
Length = 317
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 672 ELLFVFEVHFSLLEQMKQI-YDLLQYIPSYFLFGVVFG 562
E+ ++FEV S + I Y LQ +PSY + +VFG
Sbjct: 156 EVRYLFEVINSNVTDHSVIGYITLQTVPSYLIISIVFG 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,690,358
Number of Sequences: 27780
Number of extensions: 183454
Number of successful extensions: 860
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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